| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3948 |
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| Symbol | |
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| ID | 6284723 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 4422258 |
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| End bp | 4423829 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642623535 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_001897559 |
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| Protein GI | 187925917 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.822582 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGTCTG ATCGAATCTC GCGCGCGCGG ATGCTTGCGC CTCGCGCCCT GACTATTGCT
GTGGCTGCAG CCTTCACCGG CCTGCTGGCG GCTTGCGCGG TCGGCCCCGA CTACAAGCGT
CCCGCCGCCG AGATCCCGGC GTCCTACAAG GAAGCCGCGC CCGGCTGGAA AGTCGCTGAA
CCGGCCGACC AGCAGGATCG CGGCGACTGG TGGAGCATTT ACGAAGATCC TCAGCTGAAC
GCGCTCGAGG AGCGCCTGAA CACCGCCAAC CAGACAGTCG CCCAATTCGC TGCCGCCTAC
CGGCAGGCGC GCGCGCTGGT CGGCGAGGCG CGCGCGGCGT ATTTCCCGAC TATCGGCGCG
TCGGCGGGTG CAACGCGTTC CGGCAACGGG CGGTCCTCCG GCGGCAACTC GACCACGGCT
ACGAGCCGCT CCGGCGTCAG CAACAGTTTC AACGTGCAGC TCGACGCAAG CTGGGAGCCG
GATCTGTGGG GTTCGGTCAC CCGCTCGGTG AACGCGCAGA AAGCCGGCCA GCAAGGCGCC
GCGGCGGACC TCGCCAACGC GCGGCTGTCG GCCCAAGCCA CGCTCGCCCA GACCTACTTC
TCGCTGCGCG CGCTCGATTC GACCCAAAAG CTGCTCGACG ACACGGTCGC GGCCTACCAG
CGCTCGCTGC AACTCACGCA GAACCAGTAC GCGGCCGGCG TCGCCGCGCG CTCCGACGTG
ATTCAGGCGC AGACGCAATT GCAATCGGCG CAGGCGTCCG CGATCGATAA CGGCGTTCAG
CGCGCCCAGG ACGAGCACGC AATCGCCGTC CTAGTCGGCG AACCGGCCTC GACCTTCTCG
ATTCCGCCGG CGCCGCTTAC CGCCACGCCG CCCACCGTGC CGGCGCAGAT GCCGTCCGCG
CTGCTCGAGC GGCGTCCGGA TATCGCCTCG GCGGAGCGCA AGGCCGCGGC GGCGAACGAA
CAGATCGGCG TCGCCATCGC CGCTTTCTTC CCGTCGCTGA CGCTGTCGGC TTCCGGCGGC
TTCGAAAATT CGGTGTTCTC GCAACTGCTG ACCGCGCCGT CGCGCTTCTG GACGCTCGGC
CCGCAGCTCG CTGCGACGCT ATTCGACGCC GGCCTGCGCC AGGCGCAGAC CGACGCGGCG
CGCGCCGCCT ACGACGGCGA CGTCGCGACC TACCGTCAAA CGGTGCTGGC CGCGTTTCAG
GACGTCGAGG ACAATCTCGC GTCGCAACGC ATCCTCGCCC AGGAAATCGT CGTGCAGCAG
CAAGCGGTGG ATTCGGCGCG TCAGGCGCTC GCCATCGTCA CGAACGAGTA CAAGGCCGGC
ACGGTCGGCT TCGTCAACGT GCTGACGGCA CAGACCACGG CTTTCACGGC CGAGCAGAAG
CTGGAGAACA TCGCCGGACA GCGGATGGTG TCGTCGGTGG GTCTGGTGAA GGCGCTGGGC
GGCGGCTGGG ACGCCTCGCG GATGAATCGC GAAACCGGCG ATGTGGCAGC GCCGGCGCCG
CTGCCGGCAT CGTCGGCTGC GCCTGTCGCG CAAAGCACGG CGACGCCGCC GGCACGGACG
CAAGCCGAGT AG
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| Protein sequence | MQSDRISRAR MLAPRALTIA VAAAFTGLLA ACAVGPDYKR PAAEIPASYK EAAPGWKVAE
PADQQDRGDW WSIYEDPQLN ALEERLNTAN QTVAQFAAAY RQARALVGEA RAAYFPTIGA
SAGATRSGNG RSSGGNSTTA TSRSGVSNSF NVQLDASWEP DLWGSVTRSV NAQKAGQQGA
AADLANARLS AQATLAQTYF SLRALDSTQK LLDDTVAAYQ RSLQLTQNQY AAGVAARSDV
IQAQTQLQSA QASAIDNGVQ RAQDEHAIAV LVGEPASTFS IPPAPLTATP PTVPAQMPSA
LLERRPDIAS AERKAAAANE QIGVAIAAFF PSLTLSASGG FENSVFSQLL TAPSRFWTLG
PQLAATLFDA GLRQAQTDAA RAAYDGDVAT YRQTVLAAFQ DVEDNLASQR ILAQEIVVQQ
QAVDSARQAL AIVTNEYKAG TVGFVNVLTA QTTAFTAEQK LENIAGQRMV SSVGLVKALG
GGWDASRMNR ETGDVAAPAP LPASSAAPVA QSTATPPART QAE
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