Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_3887 |
Symbol | putA |
ID | 6282405 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | - |
Start bp | 4348896 |
End bp | 4352825 |
Gene Length | 3930 bp |
Protein Length | 1309 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642623474 |
Product | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_001897498 |
Protein GI | 187925856 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0506] Proline dehydrogenase [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.471061 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTAGCA CCACCCTTGG CGTCAAGGTC GACGACCTCC TGCGTTCCCG GCTGAAAGAT GCCGCTACCC GTCTTGAACG CACTCCGCAC TGGCTCATCA AGCAGGCCAT CTTCGCGTAC CTCGAAAAGA TCGAGCACGG TCAGTTGCCG CCCGAACTGT CGGGCGTGAC AGGCTCGGCG GATCTTGCCG ATGGCGCCTC GGTCGAGCAG GAAGAAGACG GCGCGTCGCA CCCGTTCCTC GAGTTCGCGC AAAACGTGCA GCCGCAATCG GTGCTGCGCG CGGCGATCAC GGCCGCTTAC CGCCGTCCCG AGCCGGAATG CTTGCCGTTC CTGGTCGGCC AGGCGCGTTT GCCGGCGAAC CTCGCGGGCG ATGTGCAGAC AATGGCCGGC AAGCTCGTCG AAACGCTGCG CACCAAGAGC AAGGGCGGTG GGGTCGAAGG TCTGATCCAC GAGTTCTCGC TGTCGAGCCA GGAAGGCGTG GCGCTGATGT GCCTCGCCGA AGCGCTACTG CGCATTCCTG ACCGCGCCAC GCGCGACGCG CTGATCCGCG ACAAGATCAG CAAGGGCGAC TGGAAATCGC ACATGGGCCA GGCGCCGTCG ATGTTCGTCA ACGCCGCGAC GTGGGGCTTG ATGATCACCG GCAAGCTGGT GACGACCAAT AGCGAAACGA GCCTTTCGTC GGCGCTTACG CGTTTGATCG GCAAGGGCGG TGAGCCGCTG ATCCGTAAGG GCGTCGACAT GGCGATGCGC CTGATGGGCG AGCAGTTCGT CACCGGAGAG AACATCTCCG AAGCGCTGGC CAATAGCCGC AAATACGAAG CACGCGGCTT CCGCTACTCG TACGACATGC TCGGCGAAGC GGCCACCACC GAAGCCGACG CGCAGCGCTA CTACGCCTCG TACGAACAGG CGATCCACGC GATCGGCAAG GCCGCCGGCG GCCGTGGCAT CTACGAAGGC CCGGGCATTT CGATCAAGCT TTCCGCGCTG CATGCACGCT ACTCGCGTTC GCAGCAGGAG CGCACGATGA GCGAATTGCT GCCGCGCGTG CGCTCGCTGG CGATCCTCGC GCGCCGCTAC GACATTGGCC TCAACATCGA CGCCGAAGAA GCCGACCGTC TGGAAATCTC GCTCGATCTG CTCGAAGCGC TGTGCTTCGA TCCGGAGCTG GCCGGCTGGA ACGGCATCGG CTTTGTGGTG CAGGCGTATC AGAAGCGTTG CCCGTTCGTG ATCGATTACA TCATCGATCT GGCGCGCCGG AGCCGTCACC GCATCATGGT GCGCCTCGTG AAGGGCGCGT ACTGGGATAC CGAAATCAAG CGCGCGCAAG TGGACGGCCT CGAAGGCTAT CCGGTGTACA CGCGCAAGAT CTACACGGAC GTGTCGTACC TCGCTTGTGC CAAGAAACTG CTGAGCGCGC CCGACGCGGT CTATCCGCAG TTCGCCACGC ACAACGCCCA CACGCTCTCG GCGATCTATC ACCTCGCGGG CAACAACTAC TATCCCGGCC AGTACGAGTT CCAGTGCCTG CACGGCATGG GCGAGCCGCT GTACGAGGAA GTCACCGGCC GCGACAAGCT GAACCGTCCG TGCCGCGTGT ACGCGCCGGT CGGCACGCAT GAAACGCTGC TCGCGTACCT CGTGCGCCGT TTGCTGGAAA ACGGCGCGAA CACGTCGTTC GTGAATCGTA TTGCCGATGA AAACGTCGCG ATCAAGGACC TGATCGCCGA CCCGGTCGAT GAAGCCTCCA AGATCGTGCC GCTCGGCGCG CCGCACGCGA AGATTCCGCT GCCGCGCAAT CTGTACGGCG CCGAGCGTCT TAATTCGATG GGCCTCGATC TGTCGAACGA GCATCGTCTG GCGTCGCTGT CGTCGGCGTT GCTGGCGAGC GCGCATCATC CGTGGCGCGC CGCGCCGATG CTGGAAGACA ACGAAATCGC CGTGGGCGTC GCGCGCGATG TGCGCAACCC GGCGGATCAT CGTGACCTCG TCGGCACGGT CGTCGAAGCG ACCCCGGAAC ATGTGAGCGC CGCGCTGGCG CATGCTGTCG CCGCGGCGCC GATCTGGCAA GCCACGCCGG TCGATGCGCG CGCCGATTGC CTCGCGCGTG CCGCCGATCT GCTCGAAGCG CAGATGCATA CGCTGATGGG TTTGGTGGTG CGTGAAGCGG GCAAGTCGCT GGCCAATGCG GTCGCGGAAA TCCGCGAAGC AATCGACTTC CTGCGCTACT ACTCCACGCA GATTCGCGAC GAGTTCTCCA ACGACACGCA TCGCCCGCTC GGTCCGGTGG TCTGCATCAG CCCGTGGAAT TTCCCGCTGG CGATTTTCAT GGGCCAGGTG GCCGCGGCGC TCGCTGCCGG CAACACGGTG CTCGCGAAGC CGGCCGAACA AACGCCGCTG ATCGCCGCGC AAGCCGTGCG CATTCTGCGC GAAGCCGGCG TCCCGGCGGG CGCAGTGCAA CTGCTGCCGG GCAATGGCGA AACGGTCGGC GCTGCATTGG TCGCCGATCC GCGCACGCGC GCCGTGATGT TCACCGGTTC CACCGAAGTC GCGCGCCTCA TCAACAAGAC GCTCTCGGGC CGCCTCGATC CGGACGGCAA GCCGATTCCG CTGATCGCCG AAACGGGCGG CCAGAATGCG ATGATCGTCG ACTCGTCGGC GCTCGCTGAA CAGGTGGTCG CGGACGTGCT GCAATCGTCT TTCGACTCCG CCGGTCAACG GTGTTCCGCG TTGCGCGTTC TTTGTCTGCA GGACGATGTC GCGGACCGCA CGCTGGAGAT GCTGACGGGC GCGATGCGCG AACTGGCTGT GGGCAATCCT GATCGTCTGT CGATCGACGT CGGCCCGGTG ATCGACCTCG ACGCGAAACG CGGTATCGAC GCGCACGTCG CGACGATGCG CGAGAAAGGC CGCAAGGTCG AGCAATTGCC GATGCCCGAC GGTTGCGCGC AAGGCACTTT CGTTCCGCCG ACGCTGATCG AACTCGACAG CATCGACGAA CTGAAGCGCG AAGTGTTCGG CCCGGTGTTG CACGTGGTGC GTTACCGCCG CAGCCAGCTC GACAAGCTGC TCGAACAGAT CCGCACGACG GGCTACGGCC TGACGCTCGG CATCCATACG CGGATCGACG AAACCATCGC TCACGTGATC AGCCGCGCGC ATGTCGGCAA CATTTATGTG AACCGCAACG TGATCGGCGC GGTGGTGGGT GTGCAGCCGT TCGGCGGCGA AGGTTTGTCG GGCACGGGGC CGAAAGCGGG CGGCGCGCTG TATCTGCAGC GTCTGCTGGC GACGCGTCCG GCCGGGTTGC CGAAGTCGCT CGCGCAGGCA TTGGTTGCGG ATGCACCGAA CGCAGCCGAA AACAGCGACA ATCCGTCCGC TGCATTGACG GCTTATCGCG ATTGGCTGAT CGCCGAGCAA CAGCCGGTGC TGGCCGCGCG CTGCGACGGC TATCTGTCGC ATATGCCGGC GGGCGCCACG GCGGTACTGT CGGGACCGAC TGGCGAGCGC AACACGTACA CGTTGGGCCC ACGCGGCACG GTGCTGTGTA TTGCGTCGAC GGCGAGCGGC GCGCGCGTGC AGTTTGCCGC GGCGCTGGCT ACGGGAAATC GCGCGCTGTT CGAAGGCGCG GCTGGTGAAC AATTGGTGGC GCAGTTGCCC GCGTCGCTGA AATCACGTGC GAGCGTGAAG AAGAGCGCGG ATGCGACTTT CGACGCCGTG CTGTTCGAAG GTGATAGCGA CGAGCTGCTG GCGCTGGTCA AGGAGGTCGC GAAGCGTCCG GGCCCGATCG TGTCGGTGCA GGGCGTGGCG GCACGCGCGC TGGAAAGCGG CGACGAAGAT TACGCGCTCG AGCGTCTGTT GACGGAACGT TCGGTCAGCG TGAATACGGC AGCAGCTGGC GGTAATGCGA ATTTGATGAC GATCGGTTGA
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Protein sequence | MASTTLGVKV DDLLRSRLKD AATRLERTPH WLIKQAIFAY LEKIEHGQLP PELSGVTGSA DLADGASVEQ EEDGASHPFL EFAQNVQPQS VLRAAITAAY RRPEPECLPF LVGQARLPAN LAGDVQTMAG KLVETLRTKS KGGGVEGLIH EFSLSSQEGV ALMCLAEALL RIPDRATRDA LIRDKISKGD WKSHMGQAPS MFVNAATWGL MITGKLVTTN SETSLSSALT RLIGKGGEPL IRKGVDMAMR LMGEQFVTGE NISEALANSR KYEARGFRYS YDMLGEAATT EADAQRYYAS YEQAIHAIGK AAGGRGIYEG PGISIKLSAL HARYSRSQQE RTMSELLPRV RSLAILARRY DIGLNIDAEE ADRLEISLDL LEALCFDPEL AGWNGIGFVV QAYQKRCPFV IDYIIDLARR SRHRIMVRLV KGAYWDTEIK RAQVDGLEGY PVYTRKIYTD VSYLACAKKL LSAPDAVYPQ FATHNAHTLS AIYHLAGNNY YPGQYEFQCL HGMGEPLYEE VTGRDKLNRP CRVYAPVGTH ETLLAYLVRR LLENGANTSF VNRIADENVA IKDLIADPVD EASKIVPLGA PHAKIPLPRN LYGAERLNSM GLDLSNEHRL ASLSSALLAS AHHPWRAAPM LEDNEIAVGV ARDVRNPADH RDLVGTVVEA TPEHVSAALA HAVAAAPIWQ ATPVDARADC LARAADLLEA QMHTLMGLVV REAGKSLANA VAEIREAIDF LRYYSTQIRD EFSNDTHRPL GPVVCISPWN FPLAIFMGQV AAALAAGNTV LAKPAEQTPL IAAQAVRILR EAGVPAGAVQ LLPGNGETVG AALVADPRTR AVMFTGSTEV ARLINKTLSG RLDPDGKPIP LIAETGGQNA MIVDSSALAE QVVADVLQSS FDSAGQRCSA LRVLCLQDDV ADRTLEMLTG AMRELAVGNP DRLSIDVGPV IDLDAKRGID AHVATMREKG RKVEQLPMPD GCAQGTFVPP TLIELDSIDE LKREVFGPVL HVVRYRRSQL DKLLEQIRTT GYGLTLGIHT RIDETIAHVI SRAHVGNIYV NRNVIGAVVG VQPFGGEGLS GTGPKAGGAL YLQRLLATRP AGLPKSLAQA LVADAPNAAE NSDNPSAALT AYRDWLIAEQ QPVLAARCDG YLSHMPAGAT AVLSGPTGER NTYTLGPRGT VLCIASTASG ARVQFAAALA TGNRALFEGA AGEQLVAQLP ASLKSRASVK KSADATFDAV LFEGDSDELL ALVKEVAKRP GPIVSVQGVA ARALESGDED YALERLLTER SVSVNTAAAG GNANLMTIG
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