| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3885 |
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| Symbol | |
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| ID | 6282820 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 4345796 |
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| End bp | 4347514 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642623472 |
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| Product | thiamine pyrophosphate protein |
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| Protein accession | YP_001897496 |
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| Protein GI | 187925854 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCAGC CGAACGCTCC CGTTTCCGAA TCCGCCGCCG CTCAAACCAC CGGCGCGCGT
CTCGTCGTCG ATGCTTTGCT CACGCACGGT GTCGAACGTG TTTTCTGTGT GCCTGGTGAG
AGTTTTCTCG CTGTGCTGGA TTCGCTGCAC GACGAAACCG AACGCATCCA GACTATTGTT
TGCCGTCACG AAGCGGCCGC GGCGAACATG GCGGAAGCCG TCGGCAAATT GACTGGGCGG
CCGGGCGTCG CGCTCGTCAC GCGCGGACCG GGCGCCACGC ATGCGTCGAT CGGCGTGCAC
ACCGCGTATC AGGATTCCAC GCCGATGATC CTGCTGATCG GCCAATGCGC GCGCGAGCAC
CTGGATCGCG AGGCGTTCCA GGAAATCGAC TATCGGCGCA TGTTCGGCCA GATGGCGAAG
TGGGTCGCAC AAATCGACGA TCCGAAGCGT ATTCCCGAAT ATCTGAGCCA CGCGTTTCAC
ACGGCGACGT CCGGACGGCC TGGCCCCGTA GTGTTGTCGT TGCCGGAAGA CGTGTTGAGC
GATGCCTGCG CAGCGGTGGC CGGCGCGCCG GCTTATCAGC GCGTGGCGGC GTCACCGTCG
GCGGCGCAGA TCGAGAAGTT GCGCGTATTG CTCGAAGGCG CGCAGCGTCC GATGGTGATC
GCGGGCGGCA GCGGTTGGAC GCCGGCTGCG TGCGCGGACT TTCGACGCTT CGTGGAGAAC
TGGCAATTGC CGGTCGGCCT CGCATTCCGC TTTCAGGACA CGCTCGACAA CGAGCATCCG
AACTATGCCG GCGACGTTGG CCTTGGCATC AATCCGGCGC TGGCGCAACG TATCCGAGAT
GCCGATGTGC TGCTCGCGAT CGGGCCGCGC CTGGGCGAAG CGACGACCAA CGGCTACACG
TTGCTCGATA TTCCGAAGAC CAAACAAACA CTCATTCACG TGCATCAAGG TGCGGAGGAA
TTGGGTCGGG TGTATGCGGC GGATCTGCCG ATCGTCTCCG GTATGCCGGA GTTGGCAGCG
ATGCTTGCGG AGCTGGAGCC TTTGTCCGAA CAGCTCGCTT GGTCGGGCGC AGCGAGCGAG
GCGCATCAGG CGTATCTCGA CTGGCGCAAG CCGCGTCAGA TTCCCGGCGA TGTGCAGATG
GGCGAAGTGA TTCAGCAGTT GCGCGCGCAT CTGCCGGACG ACGCGATTCT CACCAACGGC
GCAGGCAATT ACGCGACGTG GCTGCATCGG CACTTTTCGT ATCGCCATTA CCGTTCGCAA
CTCGCCCCGA CGAGTGGTGC GATGGGCTAC GGTGTGCCGG CGGCGATCGC GGCGAAGTCG
ATGTATCCGC ACCGCGCGGT CGTGGCGCTG GCCGGCGACG GTTGCTTCAT GATGGCCGCA
CAAGAACTCG CGACGGCGAT GCAGTACGAC CTGCACGTGC TTTTCATCGT GGTGAATAAC
GGTCACTTCG GCACGATCCG GATGCATCAG GAGCGGCATT ATCCTGGGCG GGTACATGGC
ACCGGGCTCA CGAATCCGGA TTTCGCAGCG TTCGCGCGCT CGTTCGGCGC GCATGGTGAA
ACGGTAGAGC GGACTGAGGA TTTTCTGCCT GCGTTAAAGC GTTCGATTGA GGCGAAGCGC
GCGGCTGTGA TCGAGATTCG CATGCCGCAG GAAGCGAGCA CACCGGGGGC GACGTTGGAG
CAGATTCGCG AGCAGGGGAG GAAGATGCGA GGGGAGTAA
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| Protein sequence | MSQPNAPVSE SAAAQTTGAR LVVDALLTHG VERVFCVPGE SFLAVLDSLH DETERIQTIV
CRHEAAAANM AEAVGKLTGR PGVALVTRGP GATHASIGVH TAYQDSTPMI LLIGQCAREH
LDREAFQEID YRRMFGQMAK WVAQIDDPKR IPEYLSHAFH TATSGRPGPV VLSLPEDVLS
DACAAVAGAP AYQRVAASPS AAQIEKLRVL LEGAQRPMVI AGGSGWTPAA CADFRRFVEN
WQLPVGLAFR FQDTLDNEHP NYAGDVGLGI NPALAQRIRD ADVLLAIGPR LGEATTNGYT
LLDIPKTKQT LIHVHQGAEE LGRVYAADLP IVSGMPELAA MLAELEPLSE QLAWSGAASE
AHQAYLDWRK PRQIPGDVQM GEVIQQLRAH LPDDAILTNG AGNYATWLHR HFSYRHYRSQ
LAPTSGAMGY GVPAAIAAKS MYPHRAVVAL AGDGCFMMAA QELATAMQYD LHVLFIVVNN
GHFGTIRMHQ ERHYPGRVHG TGLTNPDFAA FARSFGAHGE TVERTEDFLP ALKRSIEAKR
AAVIEIRMPQ EASTPGATLE QIREQGRKMR GE
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