| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3738 |
|---|
| Symbol | |
|---|
| ID | 6281507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 4185733 |
|---|
| End bp | 4187700 |
|---|
| Gene Length | 1968 bp |
|---|
| Protein Length | 655 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642623325 |
|---|
| Product | Lytic transglycosylase catalytic |
|---|
| Protein accession | YP_001897350 |
|---|
| Protein GI | 187925708 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0927783 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAAC GCCTTTACCG AGTATATCGC GCGGCCGGTC TGGCGCTTGC CGCTGCGGCA
CTCGTCGCGT GCAGCACGGC CTCCGCCGTC AAGCCCCTTC CCCTTTCGCA ACTCACGAAC
GACGACCAGA TCTTCGTCCA ATTGCGCGAA GCCTCCCGCA ATAATGACGC AGGGCGCGCC
GCGCAACTGG CCGCCATGAT CCCGAGCTAT CCGGCGCCTT CGTATCTGGA GTACTTCCAG
ATCAAGCCGC AGTTGTTCGA TTCGAGCGGC CACGCGCGGA TCGACGCGCC GGACGCGCCG
GTGCTGGCGT TCCTGCAGAA GTACGACGGC CAGGCGATCG CCGACCGCAT GCGCAACGAC
TACCTCACGG TGCTCGGGGC GCGGCACGAC TGGCGCAACT TCGATCAGCA ATACGCCCGC
TTCGTGCTGA ACGACGATAC CCAGGTGAAA TGCTACGCGC TCGAATCGCG TGCCTCGCGT
GGCGAAAACG TCGCCGACGC AGCGCGCGCG CTGCTGGTCG ATCCGAAGTG GTACGGCGAC
GGCTGCGTCG ATCTGATCAC CTCGCTGTCC ATCAACCAGC AGTTCAGTTC CGCCGACGTG
TGGCAACAGA TCCGCCTCGC CTACGAACAG AACTACACCA ACACGGGCGC CAAGCTCGTC
GACGCGCTCA GCAACCAGCC GCCCGATCCG GTGCTGTTCA ATCAGGCCAC CACCACGCCG
CCGCTGTTGC TCGCGCGCGG CGTCGGCCCG GATACGCAGT CGCATCAGCT CGCGCTGCTG
GCCATCACGC GCATGGCGCG CAACGATCCG GCCATGGCCG CGGCCACGTT CGCGTCGGTG
GCGCCGTCGC TGAGTTCGCC CGAACGCGCC ATCGGCTGGG GCACGATTGC CTATCAGGCC
GCCACCAAGC AGATGCCGAG TGCGGTGGAC TGGTATCGCC TGTCGGTGAA TGCGCCGCTG
TCGAATCCCG CGTATGAGTG GCGCACCCGC ACCGCCTTGC TCGCGGGCGA CTGGACGATG
GTGCGCTGGT CGATTGAACA GATGCCCGCT GCGCTGCGCA ATCAGCCGTC ATGGGTCTAC
TGGCATGCCC GCGCGCTCAA GCAGGCCGGC GACACGACCA CCGCCAACCA GGAATTCGAG
TCGATCTCGC AGGGCTACAA CTTCTACGGT CAATTGGCGG CGGAAGAGTT GGGCCAGAAG
ATCACGGTTC CGCCGAAAAC CACGGTGAGC GACGCCGAAG TGCAACAGGC CGGCAACACG
CCCGGTTTCG ATCTGGCGCA GCGTTTCTAC GCGCTGAATC TGCGGCTCGA AGGCAATCGC
GAATGGAACT GGCCGCTGCG CACCATGAGC GACCGGCAAT TGATCGCGGC CGCCGAATAC
GCGCGCCGAA TTGAACTGTA TGACCGCACC GTCAACACGG CGGATCGCAC GAAGAGCGAG
CATGATTTCT CGCTGCGCTA TCTGTCGCCG TTCAAGGATA TCGTCGAGCG CGATTCGCAG
TCGAATGGGC TGGACGTGGA GTGGGCCTAC GGCCTGATTC GCCAGGAGTC GCGCTTCATC
ATGAACGCGC GCTCGGAAGT CGGCGCGAGC GGTTTGATGC AGTTGATGCC GGGCACCGCG
CAACTGGTCG CGAAGAAGAT CGGCCTCGGT CCGATCTCGC GCGAACAGAT GAACGACATC
AACACCAACA TCCTGCTGGG CACGAACTAT CTGTCGATGA TCTACAATCA GTTCGATGGG
TCGGCCGTGC TGGCCACCGC GGGCTATAAC GCCGGCCCGG GTCGTCCGCG CAACTGGCGG
CAGTCCTTGC AGCATCCGGT GGAAGGCGCG ATCTTCGCCG AGGCGATTCC GTTCCAGGAA
ACGCGCGACT ACGTTAAGAA TGTGTTGTCC AACACGGTCT ATTACGCGGC ATTGTTCGAA
GGCCGTCCGC AATCGCTGAA GGCGCGTCTG GGTTATATCG CACCGTAA
|
|---|
| Protein sequence | MSKRLYRVYR AAGLALAAAA LVACSTASAV KPLPLSQLTN DDQIFVQLRE ASRNNDAGRA
AQLAAMIPSY PAPSYLEYFQ IKPQLFDSSG HARIDAPDAP VLAFLQKYDG QAIADRMRND
YLTVLGARHD WRNFDQQYAR FVLNDDTQVK CYALESRASR GENVADAARA LLVDPKWYGD
GCVDLITSLS INQQFSSADV WQQIRLAYEQ NYTNTGAKLV DALSNQPPDP VLFNQATTTP
PLLLARGVGP DTQSHQLALL AITRMARNDP AMAAATFASV APSLSSPERA IGWGTIAYQA
ATKQMPSAVD WYRLSVNAPL SNPAYEWRTR TALLAGDWTM VRWSIEQMPA ALRNQPSWVY
WHARALKQAG DTTTANQEFE SISQGYNFYG QLAAEELGQK ITVPPKTTVS DAEVQQAGNT
PGFDLAQRFY ALNLRLEGNR EWNWPLRTMS DRQLIAAAEY ARRIELYDRT VNTADRTKSE
HDFSLRYLSP FKDIVERDSQ SNGLDVEWAY GLIRQESRFI MNARSEVGAS GLMQLMPGTA
QLVAKKIGLG PISREQMNDI NTNILLGTNY LSMIYNQFDG SAVLATAGYN AGPGRPRNWR
QSLQHPVEGA IFAEAIPFQE TRDYVKNVLS NTVYYAALFE GRPQSLKARL GYIAP
|
|---|
| |