Gene Bphyt_3732 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_3732 
Symbol 
ID6283124 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp4179799 
End bp4180617 
Gene Length819 bp 
Protein Length272 aa 
Translation table11 
GC content67% 
IMG OID642623319 
Productshort chain dehydrogenase 
Protein accessionYP_001897344 
Protein GI187925702 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00386128 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGCCT CTCTGGACAC CGCCGCCCCG CGCGCGCCCG AAACGCCGCG CGTCGTGCTG 
ATTACCGGCG CCGCCCGCCG TATCGGGCGG GCGCTCGCGC TCGGCTTTGC CGCGCGTGGC
TGGGACGTGG CCGTCCACTA CGGCGCTTCG CGTGAGGAAG CCGACGAACT GGTCGCTGAA
ATCACCGCTC TGGGCCGCCG GGCCGTCGCC TTGCAGGCGG AATTAGGCGA TGAAGCGCAA
GTCGAGCGGC TTTTGCCGGC TTGTATCGAC GCTTTGGGCC GGCCGTCGTG TATCGTCAAC
AATGCGTCGC GCTTCGAGGA AGACACGGCG CAAACCGTCG GTTACGAACT GCTGCTGAAG
CTCACCGCGA TGAACGTCGG CGCGCCGCTG GTGCTGGCGC GCAGGCTGTT CGAGGCGACG
CCGGACGCCG CGCGCACCGA CGAAAGCCTG CGTAGCGTCG TCATCAACGT GCTGGATCAG
AAGCTGTACA ACATGAACCC GGACTATCTG TCGTACACGC TGACCAAGGC GGCGTTGCAG
ACAGCCACGG TCGCGCTGGC GCAGGCATTG GCGCCGAAAG TGCGCGTGGT CGGACTCGCG
CCCGGTCTGA CGATGCAATC CGGCGATCAA ACGCCGCAAG GTTTTGAAGC CGCTCACCGT
ACTACGCCTT TGGGCCGCGC GTCGCGGGCC GAGGATATTG TCGCCGCCGC GCTGTATCTC
GCGGATGCAG CGGGCGTCAC CGGAACGACG CTGGTGGTCG ACGGCGGGCA GCACCTCGTG
CCCCTGCCGC GCGACGTTAT GTTTTTGACG GGCGCCTGA
 
Protein sequence
MTASLDTAAP RAPETPRVVL ITGAARRIGR ALALGFAARG WDVAVHYGAS REEADELVAE 
ITALGRRAVA LQAELGDEAQ VERLLPACID ALGRPSCIVN NASRFEEDTA QTVGYELLLK
LTAMNVGAPL VLARRLFEAT PDAARTDESL RSVVINVLDQ KLYNMNPDYL SYTLTKAALQ
TATVALAQAL APKVRVVGLA PGLTMQSGDQ TPQGFEAAHR TTPLGRASRA EDIVAAALYL
ADAAGVTGTT LVVDGGQHLV PLPRDVMFLT GA