Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_3732 |
Symbol | |
ID | 6283124 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | - |
Start bp | 4179799 |
End bp | 4180617 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642623319 |
Product | short chain dehydrogenase |
Protein accession | YP_001897344 |
Protein GI | 187925702 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00386128 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCCT CTCTGGACAC CGCCGCCCCG CGCGCGCCCG AAACGCCGCG CGTCGTGCTG ATTACCGGCG CCGCCCGCCG TATCGGGCGG GCGCTCGCGC TCGGCTTTGC CGCGCGTGGC TGGGACGTGG CCGTCCACTA CGGCGCTTCG CGTGAGGAAG CCGACGAACT GGTCGCTGAA ATCACCGCTC TGGGCCGCCG GGCCGTCGCC TTGCAGGCGG AATTAGGCGA TGAAGCGCAA GTCGAGCGGC TTTTGCCGGC TTGTATCGAC GCTTTGGGCC GGCCGTCGTG TATCGTCAAC AATGCGTCGC GCTTCGAGGA AGACACGGCG CAAACCGTCG GTTACGAACT GCTGCTGAAG CTCACCGCGA TGAACGTCGG CGCGCCGCTG GTGCTGGCGC GCAGGCTGTT CGAGGCGACG CCGGACGCCG CGCGCACCGA CGAAAGCCTG CGTAGCGTCG TCATCAACGT GCTGGATCAG AAGCTGTACA ACATGAACCC GGACTATCTG TCGTACACGC TGACCAAGGC GGCGTTGCAG ACAGCCACGG TCGCGCTGGC GCAGGCATTG GCGCCGAAAG TGCGCGTGGT CGGACTCGCG CCCGGTCTGA CGATGCAATC CGGCGATCAA ACGCCGCAAG GTTTTGAAGC CGCTCACCGT ACTACGCCTT TGGGCCGCGC GTCGCGGGCC GAGGATATTG TCGCCGCCGC GCTGTATCTC GCGGATGCAG CGGGCGTCAC CGGAACGACG CTGGTGGTCG ACGGCGGGCA GCACCTCGTG CCCCTGCCGC GCGACGTTAT GTTTTTGACG GGCGCCTGA
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Protein sequence | MTASLDTAAP RAPETPRVVL ITGAARRIGR ALALGFAARG WDVAVHYGAS REEADELVAE ITALGRRAVA LQAELGDEAQ VERLLPACID ALGRPSCIVN NASRFEEDTA QTVGYELLLK LTAMNVGAPL VLARRLFEAT PDAARTDESL RSVVINVLDQ KLYNMNPDYL SYTLTKAALQ TATVALAQAL APKVRVVGLA PGLTMQSGDQ TPQGFEAAHR TTPLGRASRA EDIVAAALYL ADAAGVTGTT LVVDGGQHLV PLPRDVMFLT GA
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