| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3619 |
|---|
| Symbol | rpsD |
|---|
| ID | 6284335 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 4062335 |
|---|
| End bp | 4062958 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642623199 |
|---|
| Product | 30S ribosomal protein S4 |
|---|
| Protein accession | YP_001897233 |
|---|
| Protein GI | 187925591 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
|---|
| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00390122 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00000000725029 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGCACGTT ATATCGGCCC TAAGGCCAAG CTGTCCCGCC GTGAAGGCAC TGACCTCTTC
CTGAAGAGCG CCCGTCGTTC GCTCGCTGAC AAGTGCAAGC TTGACAGCAA GCCCGGCCAA
CACGGCCGCA CCTCGGGCGC TCGTACGTCC GACTACGGCA CGCAGCTGCG CGAAAAGCAA
AAAGTGAAGC GCATCTACGG TGTCCTCGAG CGTCAATTCC GTCGTTACTT CGCTGAAGCC
GACCGCCTGA AGGGCAACAC GGGTGAAAAC CTGCTGCAAT TGCTCGAATC GCGTCTGGAC
AACGTCGTGT ACCGCATGGG CTTCGGCTCC ACGCGCGCTG AAGCACGTCA GCTCGTGAGC
CACAAGGCGA TCGTCGTGAA CGGCGTCGTG TCGAACATCC CGTCGATGCA AGTGAAGGCT
GGCGACGTCG TCGCGGTGCG CGAAACGAAG AAGAAGCAGG CGCGTATTCT CGAAGCGCTG
TCGCTGGCTG AGCAAGGTGG TATGCCGAGC TGGGTCGCTG TCGATTCGAA GAAGTTCGAA
GGTACGTTCA AGCAGAAGCC GGAACGCAGC GACATCGCTG GCGATATCAA CGAAAGCCTG
ATCGTCGAAT TGTATTCGCG GTAA
|
|---|
| Protein sequence | MARYIGPKAK LSRREGTDLF LKSARRSLAD KCKLDSKPGQ HGRTSGARTS DYGTQLREKQ
KVKRIYGVLE RQFRRYFAEA DRLKGNTGEN LLQLLESRLD NVVYRMGFGS TRAEARQLVS
HKAIVVNGVV SNIPSMQVKA GDVVAVRETK KKQARILEAL SLAEQGGMPS WVAVDSKKFE
GTFKQKPERS DIAGDINESL IVELYSR
|
|---|
| |