| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3599 |
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| Symbol | |
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| ID | 6283027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 4040407 |
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| End bp | 4042182 |
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| Gene Length | 1776 bp |
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| Protein Length | 591 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642623179 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_001897213 |
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| Protein GI | 187925571 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00505018 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000000614182 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGACTGG CGAAGCTATT TTCTATTGCC GTGTCGAGTG CCGATACACG TGTGTCGCCT
CGTCTGATAG TCGGTCTCAG CCTGTGTTTT GGCGCGGCGC TGGGCGCCGG CGTCACGCGG
GCGTCGACTC CACCGTTGCC GCCGTTGCCC GCCTACATGC CGTTCGACGA CGCGGTATCG
CCACGCGATG CTTCGTACAA CGGCACACCG CCGCTGCCGC GCGACGTTTC CGCGGAGGAG
GTGCCCAATC CGTTTCGTCA GGATTCCGCA GACGATCGCG ACGCGTCGCG TATGAGCAGC
GCGACAGCGG CGAATACTCG CACGGACGAA CCTGCCGCCG ATGATGCCGA GGGCTTGCTG
CAGTTACAGT CGCAGTCGCG AAGGCAATCC ATCACTCCAA CTCGCGAGGA CCCCGACGCC
GATTTCGACG GCTCCGTGCC GCTGCGAAGA CAGTTCGCTG CGTCGGCTCG CGCCGATGCG
ACCGGCACCG CCGCGCTCGA AGGTCCGCCG GTGCCGCTGC CGCCGCTCGC GCGCCTGAGC
AACGCGCCAC GCAGCGCCGC CGACGCGGTC CTCGCCCCCG ACGACAAACC GATCTCGCTG
AATTTCCAGC GTGCCGAACT CGGCGCCGTC CTCAGTGCGT TCGCCCGATT CACCGGGCTG
AACATCGTTG CGAGCGAGAG AGTGCGCGGC GCCGTCTCGT TGCGGCTCGA CAAGGTGCCA
TGGCGCACCG CGTTCGACAC CCTTCTGGAC GTCAACGGGC TCGCGATGGA GCGCCACGGC
AACGTGATCT GGGTCGCGCC GATCGCGGAT CTGGCCGCGC GCGAACGGCA GCGCTTCGAA
GCGCACGCCC GGGCCGCCGA TCTCGAACCG CTCGCGAGCC GCACTTTCGA ACTGCACTAC
GCGCACGCCG AAGACGTCAG GCGTCTGCTG ACCGGTTCGG GCGCCCAGCG CGTGTTGTCC
AAGCGTGGTG CCGCGACTGC CGATCCGCGC ACCAATCTGC TGTTCGTGAC CGATCTCGAA
GGGCGCCTCG CGCAGATAGC CGCGCTGCTA GCTTCCGTCG ACCGGCCCAC GCGCCAGGTG
TTGATCGAAG CGCGTATCGT CGAGGGCGAA CATGGGTTTT CGCGCAATCT CGGCGTGAAG
CTCTCCATGG CGGCCACCAA CGCCGACGGC ACCGCGAAAG GCTTGACCGA CGCCGGCTAT
GATCTGTCGG CGCGCCCGAT TTCCGGCTTC GATGTCGCGA CTGCCGGCCT GACCTTGTTC
GCCGCCGGCG CGACGCGGCT GCTGAACATC GAGCTGAGCG CGCTGGAAGC GCAGGGGCGC
GGCGAAATTG TCTCGAGTCC GCGCGTGGTC ACCGCCGACC GGATGAAAGC GGTCGTCGAG
CAGGGCACCG AGCTGCCGTA TCAGGCGAAA GTGGGGCAAG GCGTGTCGGG CGTGCAGTTT
CGCCGCGCCA CGCTCAAACT GGAGGTCGAG CCGCAAATCA TGCCGGACGG CCGGGTGGTG
CTTGACCTCG ACGTCGCCAA GGACAGCGTC GGCGAACAGA CCGACGCCGG GCCCGCGATC
AACACCAAGC ACGTGCAAAC GCGCGTCGAG GTCGAGGATG GTGGTACGGT GTCGATCGGC
GGAATTTATG CGACCGACGA CCGGGACGAT GTGACGCGGG TTCCGGTCCT GGGCAAAATA
CCGGTTCTGG GTGCGCTTTT CCGCCATCGG GCTCATCGCG ACCAGCGCAG CGAACTGGCT
GTTTTCATTA CGCCGCGCGT CGTTCAGACA AATTAG
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| Protein sequence | MRLAKLFSIA VSSADTRVSP RLIVGLSLCF GAALGAGVTR ASTPPLPPLP AYMPFDDAVS
PRDASYNGTP PLPRDVSAEE VPNPFRQDSA DDRDASRMSS ATAANTRTDE PAADDAEGLL
QLQSQSRRQS ITPTREDPDA DFDGSVPLRR QFAASARADA TGTAALEGPP VPLPPLARLS
NAPRSAADAV LAPDDKPISL NFQRAELGAV LSAFARFTGL NIVASERVRG AVSLRLDKVP
WRTAFDTLLD VNGLAMERHG NVIWVAPIAD LAARERQRFE AHARAADLEP LASRTFELHY
AHAEDVRRLL TGSGAQRVLS KRGAATADPR TNLLFVTDLE GRLAQIAALL ASVDRPTRQV
LIEARIVEGE HGFSRNLGVK LSMAATNADG TAKGLTDAGY DLSARPISGF DVATAGLTLF
AAGATRLLNI ELSALEAQGR GEIVSSPRVV TADRMKAVVE QGTELPYQAK VGQGVSGVQF
RRATLKLEVE PQIMPDGRVV LDLDVAKDSV GEQTDAGPAI NTKHVQTRVE VEDGGTVSIG
GIYATDDRDD VTRVPVLGKI PVLGALFRHR AHRDQRSELA VFITPRVVQT N
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