| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3589 |
|---|
| Symbol | |
|---|
| ID | 6282352 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 4026794 |
|---|
| End bp | 4028068 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642623169 |
|---|
| Product | D-amino-acid dehydrogenase |
|---|
| Protein accession | YP_001897203 |
|---|
| Protein GI | 187925561 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0959455 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00000935542 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACGA TTGTTCTGGG CGGCGGCGTG ATTGGCGTCG CCACCGCTTT TTACCTGCGC
CAGCAGGGCT GCGAAGTCAC TGTGATCGAG CGCGAACCGG ACGTTGCGCT CTCCACCAGT
TTCGGCAACG CGGGGGTAAT CGCGCCGGGC TATGTCACGC CTTGGGCCGC GCCCGGCATG
CCAGCCAAGA TCCTCAAATA CCTGTTCAAG CCGGCCTCAC CGCTGATCTT CCGCCCCACT
CTCGATGCGG CTCAATGGCG CTGGATCGCG CGCTGGCTGC ATGAATGCGA TCTCGAACGG
TTTCGCGTCA ACAAGCAGCG CATGCAGCGC ATTGCTTACT ACAGCCGCGA CTGTCTGCAT
GAATTCCGCG CCCGCTATCC CTTCGACTAC GGCCGCAGCC AAGGCTATCT GCAGTTGTTC
CGCAGCGAGT ACGACGTCGA ACTCGCGCAG CCGGCGCTCG CCGTGTTGCG CGACGCGGGT
ATCGCGCATC GGGAAGTCAG CGCGGCGCAG TGTGTCGAGA TCGAGCCGGG TTTGAGCTGG
GCGCGTCAGG CGCCGCTCTC GGGCCTTTAT CTGCCCGACG ACGAAGCCGG CGATTGCGCC
CGCTTCACGC GCGAATTGCG CGCTATATGC GAGCGCAACG ACGTGCGCTT TCGCTTCGAT
ACGCGGGTGA CGTCGCTCGA TGTGCACGGC GGGGCGGTGC GCGCGGTGCG TATCGAGAGC
GAACGCGGCG CCGAGATGCT GTACGCGGAT GCCGTGGTGG TGGCGCTGGG CGTCGACAGC
GCGGGGTTGC TCGCGCGGCT CGGCGTGAAG GTGCCGCTTT ATCCGGTGAA GGGCTATTCG
GCGACGCTAC CCGTCACCGA TGAAGAAAAA GCCCCGCGCG GCGCGCTGAT GGACGAATCG
CTGAAGACGG CGATTACGCG ATTCGGCAAC AACCTGCGGG TGGCCGGCAC CGCGGAACTT
GGCAATCGCC AAACCACCTT GCGCGAACAG GCCTTGCAAA CGCTGATGAA AGTGCTCAAC
GACTGGTTCC CTCACGCGGC CAATCCCACG TCCGCGCATT TCTGGGTGGG ACGCCGTCCA
ATGACACCCG ACGGCGCGCC GCTGCTCGGT CCGTCCGGCG TGGAAAAGCT GTGGCTGAAC
CTCGGACACG GCTCGACGGG CTGGGCAATG TCGATGGGTT CGGGACGCGT GGTCGCGGAC
CTGATCACGC ACCGCAAGCC GGAGATCGAT CTCGACGGAT TGACCTTGGC GCGGTATCGC
AAGTCACGCG GCTAA
|
|---|
| Protein sequence | MKTIVLGGGV IGVATAFYLR QQGCEVTVIE REPDVALSTS FGNAGVIAPG YVTPWAAPGM
PAKILKYLFK PASPLIFRPT LDAAQWRWIA RWLHECDLER FRVNKQRMQR IAYYSRDCLH
EFRARYPFDY GRSQGYLQLF RSEYDVELAQ PALAVLRDAG IAHREVSAAQ CVEIEPGLSW
ARQAPLSGLY LPDDEAGDCA RFTRELRAIC ERNDVRFRFD TRVTSLDVHG GAVRAVRIES
ERGAEMLYAD AVVVALGVDS AGLLARLGVK VPLYPVKGYS ATLPVTDEEK APRGALMDES
LKTAITRFGN NLRVAGTAEL GNRQTTLREQ ALQTLMKVLN DWFPHAANPT SAHFWVGRRP
MTPDGAPLLG PSGVEKLWLN LGHGSTGWAM SMGSGRVVAD LITHRKPEID LDGLTLARYR
KSRG
|
|---|
| |