Gene Bphyt_3576 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_3576 
Symbol 
ID6281082 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp4014823 
End bp4016574 
Gene Length1752 bp 
Protein Length583 aa 
Translation table11 
GC content63% 
IMG OID642623156 
ProductABC transporter domain protein 
Protein accessionYP_001897190 
Protein GI187925548 
COG category[R] General function prediction only 
COG ID[COG4178] ABC-type uncharacterized transport system, permease and ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0754799 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000117282 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACACCGA ATACCTCTGC CACCCCCGTG CTGCCGCCGG ACGAAAAAGT CTCCGCCTGG 
AGCCTGATCA AACCCTACTG GGTTTCCGAA GAACGAAAAA CGGCATGGGG CCTGCTCATC
GCGATCATCG TGATGAATCT GCTCGTGGTG TGGATCAACG TACGGCTGAA CCGCTGGAGC
GCCGACTTCT ACAACGCGCT GCAAACCAAG AACGTGCGCG ACTTCCCTCA CCTGCTGATG
GTGTTCTCGG GGCTCGCGTT CGGCTTCATC ATTCTCGCGG TGTACGGCCG TTATCTGCGT
CAGATGCTCG GCTTCCGCTG GCGCCAGTGG CTGACCACGC GCTATCTGAA CGAGTGGCTG
AACGACAGCG CGTTCTACCG GATCGAACGC GATCGCCTCG CCGACAACCC CGACCAGCGG
ATCAGCGACG ACCTGCAGTC GTTCGCCACC AGCACGCTCT CGTTGACGCT CGACCTGCTG
TCCACCGTCG TCACGCTGGT GTCGTTCATC ACCATCCTGT GGTCGCTGGC CGGCGCACTG
ACCATTTCGC TCGGCGGCAT GCCGATCGAG ATTCCCGGCT ACATGGTATG GGCCGCGGCG
CTCTACGCCG TGGTCGGCTC GCTGATTATC CAGAAGGTCG GCCATCCGCT CGTGCCGATC
AATTACCAGG CGCAGAAAGT AGAGGCGGAT TTCCGTTTCG GCCTGATCCG TCTGCGTGAA
AACGCCGAGC AGATCGCGTT CTACAACGGC ATGGATACCG AGAAAGCGAA CGCGCACTCG
CTGTTCGGCC GCATCCGCGA CAACTGGTGG CAGGTGATGA AGTACACCAA GCGGCTCACC
TTCGTGCTGA GCTTCTATGG CCAGATCGCG ATCATCTTCC CGCTGGTGGT CGCCGCGCCG
CGCTACTTTG CCGGCGCCTT CACGTTCGGC GTGCTGATGC AGATCTCCAG CGCCTTCGGC
ACCGTCAGCG ATTCGTTCTC GTGGTTCATC AACAGTTACG GCACCTTGGT CGAATGGCGC
GCTACCGTGA ACCGGTTGCG TGAATTCAAG CGCGTCGTGC ATGCACCGCG TCTGAAGGAA
TCGGTCTCGC CGGCTACCGC GCATGGCGGC ATCAATCTGC ATTTCGTCGA CGAAGACAAG
CTCTCCACCG AAGGCCTCAA GCTCGCCCTG CCTAACGGCA ACCCGCTGTC GCGCATTCGC
GATGTGGCGA TTCAGCCGGG CTCGCGCTGG CTGGTGCGCG GCCCGTCAGG CTCGGGCAAG
AGCACGCTGA TGCGCGCGCT CGCCGGTTTA TGGCCGTTCG GCGACGGCTC GATCGATGCC
CCGGTCAACG CCCGCATGAT GTTCATCCCA CAGGTCAGCT ACATGCCGAT CGGCACGCTC
AAAGCGGCGC TCGCCTATCC GTCGGCCGCC AGCACCTACA CCGACGACGA ATGCCGCGAG
GCGCTCATCG TCTGCCATCT GTCGGAATAC GCGGACCGTC TGCAGGAATC GGGACACTGG
ACTCGTATTC TGTCGCCGGG CGAGCAGCAG CGCCTCGCCG CCGCGCGCGT GCTGCTGCAC
AAGCCCGACT ATCTGTTCCT CGACGAAGCC ACCAGTGCGC TCGACGCGGA AAACGAGGCG
CGTTTGTACC GCCTGTTCAC GGAGCGGCTG CCGAAGGCGG CGATTGTGAG CGTCGCGCAT
CGCGAGTCGC TGGCCGCGTT CCATGACGAG ACGCTCGACG TCGAGCGCTC GGGCGAAGCG
GTCGCGGCAT GA
 
Protein sequence
MTPNTSATPV LPPDEKVSAW SLIKPYWVSE ERKTAWGLLI AIIVMNLLVV WINVRLNRWS 
ADFYNALQTK NVRDFPHLLM VFSGLAFGFI ILAVYGRYLR QMLGFRWRQW LTTRYLNEWL
NDSAFYRIER DRLADNPDQR ISDDLQSFAT STLSLTLDLL STVVTLVSFI TILWSLAGAL
TISLGGMPIE IPGYMVWAAA LYAVVGSLII QKVGHPLVPI NYQAQKVEAD FRFGLIRLRE
NAEQIAFYNG MDTEKANAHS LFGRIRDNWW QVMKYTKRLT FVLSFYGQIA IIFPLVVAAP
RYFAGAFTFG VLMQISSAFG TVSDSFSWFI NSYGTLVEWR ATVNRLREFK RVVHAPRLKE
SVSPATAHGG INLHFVDEDK LSTEGLKLAL PNGNPLSRIR DVAIQPGSRW LVRGPSGSGK
STLMRALAGL WPFGDGSIDA PVNARMMFIP QVSYMPIGTL KAALAYPSAA STYTDDECRE
ALIVCHLSEY ADRLQESGHW TRILSPGEQQ RLAAARVLLH KPDYLFLDEA TSALDAENEA
RLYRLFTERL PKAAIVSVAH RESLAAFHDE TLDVERSGEA VAA