| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3570 |
|---|
| Symbol | |
|---|
| ID | 6281621 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 4009024 |
|---|
| End bp | 4009791 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642623150 |
|---|
| Product | protein of unknown function DUF140 |
|---|
| Protein accession | YP_001897184 |
|---|
| Protein GI | 187925542 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0767] ABC-type transport system involved in resistance to organic solvents, permease component |
|---|
| TIGRFAM ID | [TIGR00056] conserved hypothetical integral membrane protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.392913 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0000192838 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATCAGTG CGATCGGCCG CTCGGTGATC GGCGGGCTGG GCACAGCCGG CTACGCCACG
CGCTTTTTCT TCCGGCTGCT GCTCGAGTTT TTTCCGTTGT TGCGCCGTCC GCGTCTTGTC
ACGAAGCAGA TCCACTTCGT GGGTAATTAT TCGCTGGTGA TCATTGCGGT GTCGGGGCTG
TTCGTCGGCT TCGTGCTTGG CTTGCAGGGC TACTACACGC TGAACCGCTA CGGCTCCGAG
CAGGCGCTCG GCCTGCTGGT CGCGCTGTCG CTCGTGCGCG AACTCGGCCC GGTGGTCACG
GCGCTCCTGT TCGCCGGGCG CGCGGGCACG TCGCTCACCG CCGAGATCGG CTTGATGAAG
GCCGGCGAGC AACTGACCGC AATGGAAATG ATGGCCGTCG ACCCGGTCAA GGTGGTGGTC
GCGCCGCGTC TGTGGGCCGG CATCATCTCG ATGCCGATCC TCGCGGCGAT CTTCAGCGCG
GTCGGCGTGT TCGGCGGCTA TGTGGTGGGC GTGCTGCTGA TCGGCGTCGA TGCCGGCGCG
TTCTGGTCGC AGATGCAAGG CGGCGTCGAT GTCTGGCGCG ACGTTGGCGC GGGCGTGATC
AAGAGCGTGG TGTTCGGCCT TGCGGTGACG TTCGTTGCAC TGTTTCAAGG CTATGAAGCC
AAGCCGACGC CGGAAGGCGT GTCGCGCGCC ACGACCAAGA CGGTCGTGTA CGCGTCGCTC
GCGGTGCTCG GCCTCGATTT TCTGCTGACC GCACTGATGT TCAGCTAA
|
|---|
| Protein sequence | MISAIGRSVI GGLGTAGYAT RFFFRLLLEF FPLLRRPRLV TKQIHFVGNY SLVIIAVSGL
FVGFVLGLQG YYTLNRYGSE QALGLLVALS LVRELGPVVT ALLFAGRAGT SLTAEIGLMK
AGEQLTAMEM MAVDPVKVVV APRLWAGIIS MPILAAIFSA VGVFGGYVVG VLLIGVDAGA
FWSQMQGGVD VWRDVGAGVI KSVVFGLAVT FVALFQGYEA KPTPEGVSRA TTKTVVYASL
AVLGLDFLLT ALMFS
|
|---|
| |