| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3568 |
|---|
| Symbol | |
|---|
| ID | 6281619 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 4007338 |
|---|
| End bp | 4008360 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642623148 |
|---|
| Product | VacJ family lipoprotein |
|---|
| Protein accession | YP_001897182 |
|---|
| Protein GI | 187925540 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2853] Surface lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0155461 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0000211515 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAGACCA CACGCATCAG CGGCGCGCGC GCCTTCCAGG CCGGTAAGCT GGCGGTAGCC
GCAGCGCTGC TCGCCGGCTG TACGACTGTG CAGACGCCGA CCCCGGGCGA TCCGCTCGAA
GGCTTGAACC GCACGATCTT CACCGTCAAC GACAAGCTCG ATCAATACGC GCTCAAGCCC
GTCGCGAAGG GCTATGTGTT CATCACACCG CAGCCGGTGC GCGACAGCGT GACGAACTTC
TTCTCGAACA TCGGCGACGT CTACATTGCG GCGAACAACT TGCTGCAGTT GAAGATCACC
GACGGCGTCG AAGACATCAT GCGAATCGTG ATCAACACGG TGTTCGGCGT TGGCGGTCTG
TTCGACGTGG CGACGCTCGC CAAGCTGCCC AAGCACGACA ACGACCTCGG CCTCACGCTT
GGCCACTACG GCGTGCCGGC GGGCCCATAC CTCGTGCTGC CGCTGTTCGG ACCGAGCACT
GTGCGCGACG CGGTCGGCTC GATCGGCAAT TACTATGTGA ACCCGCTCAG CTACATTCAT
CCGGATGGGC TCAGCTGGGC GCTGTACGGC CTGAACATCG TCAACACGCG GGCGAATCTG
CTGAACGCCG GCGACGTGCT GGAAGGCGCC GCGCTCGACA AATACTCGTT CGTGCGTAGC
GCGTATCTGC AACGCCGTCA GTACCTGTTG TCGGACGGCA AACAGTCGCA GGCGCTGCCC
AATTATGGCG ACGAAGCGCC GCTGCCGAAG TACGACGACG TCGACAGCGG AGCCGCCGAT
GCGCCGGCGG GCGCCGCGGG CACGCAGGGT GCTGCTGCCG CGAAGGCGGC GCCGGCTTCG
GATGCGACCG CGGCAACGCC GCCGCAAGCG GCGTCGGGCA CCGCGGCCGC GCCTGAGGCT
GCTTCGGGCA CGGCCGAATC TCCGCCGCTG GACCTGAACG GCGGTCCTGA AACGACTCAG
ATCCCGGCCG GCCAACTGGT TCCGCCCACG CGCTTTAACT TTCCGTCATT CAAATTGCGT
TGA
|
|---|
| Protein sequence | MQTTRISGAR AFQAGKLAVA AALLAGCTTV QTPTPGDPLE GLNRTIFTVN DKLDQYALKP
VAKGYVFITP QPVRDSVTNF FSNIGDVYIA ANNLLQLKIT DGVEDIMRIV INTVFGVGGL
FDVATLAKLP KHDNDLGLTL GHYGVPAGPY LVLPLFGPST VRDAVGSIGN YYVNPLSYIH
PDGLSWALYG LNIVNTRANL LNAGDVLEGA ALDKYSFVRS AYLQRRQYLL SDGKQSQALP
NYGDEAPLPK YDDVDSGAAD APAGAAGTQG AAAAKAAPAS DATAATPPQA ASGTAAAPEA
ASGTAESPPL DLNGGPETTQ IPAGQLVPPT RFNFPSFKLR
|
|---|
| |