| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3560 |
|---|
| Symbol | hisD |
|---|
| ID | 6282201 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 4000740 |
|---|
| End bp | 4002062 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642623140 |
|---|
| Product | histidinol dehydrogenase |
|---|
| Protein accession | YP_001897174 |
|---|
| Protein GI | 187925532 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0141] Histidinol dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00069] histidinol dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.95048 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0000626576 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCTATCA AGATTCGCAA ACTCGATTCC ACCGCTCCCG ACTTCCAGAA GTCGCTGCAC
GCGGTGCTCG CGTTCGAGGC GAGCGAAGAC GAAGCAATCG AGCGCTCGGT CGCGCAGATT
CTGAACGACG TGAAGGCGCG CGGCGACGCT GCAGTGCTCG AATACACGCA GCGCTTCGAC
CGTGTCGAGG CGAAGAGCGT CGATGCGCTC GAGTTGCCGA TGTCGGAACT GGAAGCGGCG
CTCGAGAATC TCGAGCCGAA GCGCCGCGCG GCGCTCGAAG CGGCGGCGGC GCGGGTGCGC
GGGTACCACG AGAAGCAGAA GATCGAGTGC GGCAGCCACA GCTGGCAGTA CACGGAAGCC
GACGGCACCG TGCTCGGCCA GAAAGTCACG CCGCTGGATC GCGCGGGTAT CTACGTGCCG
GGCGGCAAGG CGGCGTATCC GTCGTCAGTG CTGATGAACG CTATTCCGGC GCGAGTGGCC
GGCGTGCGCG AAATCGTCAT GGTCGTGCCC ACGCCGGACG GTGTGAAGAA TCCGCTGGTG
CTCGCGGCCG CGCTGCTGGG CGGCGTGGAC CGCGTGTTCA CGATCGGCGG CGCGCAGGCG
GTCGGCGCGC TGGCGTACGG CACGGCGACC ATTCCCGCGG TCGACAAGAT CTGCGGTCCC
GGCAACGCAT ACGTCGCGTC GGCCAAGCGC CGCGTGTTCG GCACGGTCGG CATCGACATG
ATCGCCGGGC CGTCGGAAAT CCTCGTGCTC TGCGACGGCA CCACGGACCC GCGCTGGGTC
GCGATGGATC TGTTCTCGCA AGCCGAGCAC GACGAACTCG CGCAGTCCAT CTTGTTGTGC
CCTGACGATG CGTTCATCGG CCGCGTGAAA GACGCGATCG ACGAACTGCT GCCCACCATG
CCGCGCCGCG ACGTGATCCG CAAGTCGCTG GAAGACCGTG GCGCGCTGAT CAAGGTGCGC
GACATGGAGC AAGCCTGCGC GATCGCCAAC GACATCGCCC CGGAACACCT CGAAATCTCC
GCGCTGGAGC CGCATCATTG GGGCCAACTG ATCCGCCATG CCGGCGCGAT CTTTCTCGGC
CGCTACACCA GCGAAAGCCT CGGCGACTAC TGCGCGGGGC CTAATCACGT CTTACCTACG
TCTCGTACCG CACGGTTCTC GTCTCCTTTG GGCGTCTATG ATTTCTTCAA GCGTTCGAGC
GTGATCGAGG TCAGCGCGGA AGGCGCGCAG ACGCTCGGCG AGATCGCCGC CGAGCTCGCT
TACGGCGAAG GCCTGCAGGC GCATGCCCGC AGCGCCGAAT ACCGGATGCG GCAAAACGGC
TAA
|
|---|
| Protein sequence | MSIKIRKLDS TAPDFQKSLH AVLAFEASED EAIERSVAQI LNDVKARGDA AVLEYTQRFD
RVEAKSVDAL ELPMSELEAA LENLEPKRRA ALEAAAARVR GYHEKQKIEC GSHSWQYTEA
DGTVLGQKVT PLDRAGIYVP GGKAAYPSSV LMNAIPARVA GVREIVMVVP TPDGVKNPLV
LAAALLGGVD RVFTIGGAQA VGALAYGTAT IPAVDKICGP GNAYVASAKR RVFGTVGIDM
IAGPSEILVL CDGTTDPRWV AMDLFSQAEH DELAQSILLC PDDAFIGRVK DAIDELLPTM
PRRDVIRKSL EDRGALIKVR DMEQACAIAN DIAPEHLEIS ALEPHHWGQL IRHAGAIFLG
RYTSESLGDY CAGPNHVLPT SRTARFSSPL GVYDFFKRSS VIEVSAEGAQ TLGEIAAELA
YGEGLQAHAR SAEYRMRQNG
|
|---|
| |