Gene Bphyt_3495 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_3495 
Symbol 
ID6283318 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp3939398 
End bp3940114 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content64% 
IMG OID642623074 
Productphosphoglycolate phosphatase 
Protein accessionYP_001897109 
Protein GI187925467 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID[TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0294223 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0000911523 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCGCTC CGTTCCCCAC CCCGACTTTC ACCGGCCCAC GCCTGCAAGC CGCGATCATC 
GACCTCGACG GCACGATGAT CGATACCGCC GACGATTTCA CCGCCGGCCT GAACGGCATG
CTCGCGCAAC TCGACGCGGA AGAAACGTCG CGCGAAGAAG TGGTCGGTTA TGTCGGCAAG
GGTTCGGAGC ATCTGATCCG CAGCGTGCTG GCGCCGCGCT TCGAAACGGA ACGCGCGCAA
GACCGCTTCG ACGAAGCGCT CGCGATCTAT CAGGAGGAGT ACGCGAAGAT CAACGGCACG
CACACGCGGC TCTATCCCGA TGTCGAAGCC GGCCTGATCG CCATGCGCGA CGCCGGCCTC
AAGCTCGCCT GCGTGACCAA CAAGCCGCAT CGGTTCGCGG TGGAATTGCT GCAGCAGTAT
GGGCTTGCCC AGTATTTCAG CGTCGTGATC GGCGGCGACA GTCTGGCGAA AAAGAAGCCG
GATCCGCTGC CCATGCTCAC CGCGGCGGCG CAGTTGGGCG TGAAGCCGCA GGCCACGGTT
GCCATCGGCG ATTCGGAAAA CGACGCGCTG GCGGGCCGTG CGGCCGGCAT GGCGACGCTC
ACGGTGCCCT ACGGCTACAA CCACGGCCAA GCTATACAAA CAATAAAATC CGATGGTATA
GTTGGCTCGC TGCTCGACGC CGCCAAGGCG ATCGCAGCGC ACCAATCCAC GACCTGA
 
Protein sequence
MTAPFPTPTF TGPRLQAAII DLDGTMIDTA DDFTAGLNGM LAQLDAEETS REEVVGYVGK 
GSEHLIRSVL APRFETERAQ DRFDEALAIY QEEYAKINGT HTRLYPDVEA GLIAMRDAGL
KLACVTNKPH RFAVELLQQY GLAQYFSVVI GGDSLAKKKP DPLPMLTAAA QLGVKPQATV
AIGDSENDAL AGRAAGMATL TVPYGYNHGQ AIQTIKSDGI VGSLLDAAKA IAAHQSTT