Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_3474 |
Symbol | |
ID | 6282833 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | - |
Start bp | 3909139 |
End bp | 3910566 |
Gene Length | 1428 bp |
Protein Length | 475 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 642623048 |
Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase |
Protein accession | YP_001897088 |
Protein GI | 187925446 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.215707 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0264559 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCGGC ATGGAGATGC TATGTTCTCG CTGCGTGAAG CCGCCGCGCT GATCTCCGGC GCAACCGTTA TCGGCGACGA ATACGTCACA TTCGAACGCG TCTCGACCGA CAGCCGCAGC GCGGGCCCCG GCGATCTGTT CGTCGCGATC AAGGGCGACC GGTTCGACGC TCACGACTTT CTGCCGGACG TCGCCGCGCG CAACGTGACG GCCGTTCTCA TCACGCGCAC GCCGCAAGAC TGGACTGTGC CGGCGCTCAA AGTCACGGAC ACGCGCGTGG GTCTCGGCGC GCTCGCACGC GGCTGGCGCC GCAAGTTCAG CATGCCGCTC GTCGCCGTGA CGGGCAGCAA TGGCAAGACC ACGGTCAAGG AAATGATCGC GTCGATCTTC GCCGCCGCGG TCGGCGCCGA CGCGCGTCTC GCGACCGCGG GCAACTTCAA CAACGACATC GGCTTGCCGC TCACGCTGTT CCGTCTGCAC GCAGCACATC AATTGGCGGT AGTCGAACTG GGCATGAACC ATCCGGGCGA AACCTTGGAG CTCGCGAAAA TCGCTGAGCC GACGGTCGCC GTGGTGAACA ACGCGCAGCG CGAGCATCAG GAATTCATGG CGACGGTCGA AGCGGTCGCG CTCGAACATG CGAGCGTGAT TCACGCGCTG ACGCCGGAAG GCGTCGCGGT GTTCCCCGCC GACGACGCCT ACGCGAGCAT CTGGCGCGTG GCCGCAACCG GCAGCCGCAT CATGGATTTC GCACTGAACT CCGCCGAGCG CATCACCGAG GCGGCGGTGA AAGGCACGTT CGCCGGCAAC GTCCTGAGCA TCGACACGCC GGAAGGCCAG ATCGAAGTCA CGCTGCAAGT GCTCGGCGAC CACAATGCGC ACAACGCACT GGCCGCAACG TCGGCAGCTT TGGCAGCGGG CGTGTCGCTC GACGCCATCA AGCGCGGCCT CGAATCGTTC GGCGCCGTGA AAGGCCGTTT GCAGGTGAAG CAAGCTGTGC TCGGCACGCT CGCCGGCGCC ACCGTCATCG ACGACACCTA TAACGCCAAC CCCGATTCGA TGCGCGCCGC GATCGACGTG CTCGCCTCAC GTGCCGCGCC GCGCGTGCTG GTGATGGGCG ACATGGGCGA AGTCGGCGAC AACGGTCCGG CGTTCCACCG CGAAATTGGC GCTTACGCCA AGGAGCGCGG TATCGACGCG CTGTACGCAA TGGGCGACGC CTCGCGCGAC GCCTGTACCG CGTATGGCGC GAGCGCGCAT CACGTCGCCG ACATCGGCAC GCTGGTCGCG CAATTGCAGC AGGCCGGTTT CGGTTCTACT GCAACGCTTC TCGTGAAAGG CTCGCGCTTC ATGCAGATGG AGCGCGTGGT GGACGCCGTA ACGAGTCCAC AACCCAACGC AGCGGGCAGT ACGCCCGCCG CACATTGA
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Protein sequence | MNRHGDAMFS LREAAALISG ATVIGDEYVT FERVSTDSRS AGPGDLFVAI KGDRFDAHDF LPDVAARNVT AVLITRTPQD WTVPALKVTD TRVGLGALAR GWRRKFSMPL VAVTGSNGKT TVKEMIASIF AAAVGADARL ATAGNFNNDI GLPLTLFRLH AAHQLAVVEL GMNHPGETLE LAKIAEPTVA VVNNAQREHQ EFMATVEAVA LEHASVIHAL TPEGVAVFPA DDAYASIWRV AATGSRIMDF ALNSAERITE AAVKGTFAGN VLSIDTPEGQ IEVTLQVLGD HNAHNALAAT SAALAAGVSL DAIKRGLESF GAVKGRLQVK QAVLGTLAGA TVIDDTYNAN PDSMRAAIDV LASRAAPRVL VMGDMGEVGD NGPAFHREIG AYAKERGIDA LYAMGDASRD ACTAYGASAH HVADIGTLVA QLQQAGFGST ATLLVKGSRF MQMERVVDAV TSPQPNAAGS TPAAH
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