Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_3463 |
Symbol | lpxC |
ID | 6280854 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | - |
Start bp | 3896303 |
End bp | 3897220 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 642623037 |
Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
Protein accession | YP_001897077 |
Protein GI | 187925435 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0003199 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.000399265 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCTGAAGC AGCGCACTAT CAAACAAATC GTCAAGACGG TCGGCATCGG CCTGCACTCG GGCCGCAAAG TCGAACTGAC GCTCCGTCCG GCCGCGCCGG ACACGGGCAT CGTGTTTTCG CGCGTGGATC TGGCCACGCC GGTGGACATT CCCGCGTCGG CGATGGCGAT TGGCGATACG CGTATGGCTT CCGTGTTGCA GAAGGACGGC GCGCGCGTCT CGACCATCGA GCATCTGATG TCCGCCTGCG CCGGTCTCGG CATCGACAAT CTTTATATCG ACGTCACCGC CGAAGAAATT CCGATCATGG ACGGCAGCGC CGGTTCATTC GTATTTCTGA TTCAGTCTGC CGGTATTGAA GAGCAGAACG CGGCGAAGAA ATTCATCAAG GTCACCAAGC CGGTCGAAAT TCGCGACGGC GATAAATTCG CGCGCCTCGA CCCGTATTTT GGTTTCAAGC TCAAATTTAC GATCGATTTC CGTCACCCGG CTGTGGATAA AACCGGTCAG GCGCTGGAAG TGGATTTTGC CAATACGTCG TACGTGCGCG AGATCGCGCG TGCTCGCACC TTCGGTTTTG CGCATGAGGT GGAAATGATG CGCGAACTGG GTCTGGCGCG TGGCGGCAGC ATGGACAACG CGATCGTGCT GGACGAATAC CGCATTCTGA ACAACGACGG CCTGCGCTAC GACGACGAGT TCGTGAAGCA CAAGATGCTC GACGCGATCG GCGACCTGTA TGTGATCGGC CATCCGCTGC TGGCAGCGTA CGACGCGTAC AAATCGGGCC ACGGCCTGAA CAACGCGCTG CTGCGCGAAC TGCTGGCGCA CGAAGATTCG TACGAAATCG TCACCTTCGA CGACACGCAA AAGGCGCCGC GCGGTTTTGC CTACGAGACG CAGACGGCTT TTGCCTAA
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Protein sequence | MLKQRTIKQI VKTVGIGLHS GRKVELTLRP AAPDTGIVFS RVDLATPVDI PASAMAIGDT RMASVLQKDG ARVSTIEHLM SACAGLGIDN LYIDVTAEEI PIMDGSAGSF VFLIQSAGIE EQNAAKKFIK VTKPVEIRDG DKFARLDPYF GFKLKFTIDF RHPAVDKTGQ ALEVDFANTS YVREIARART FGFAHEVEMM RELGLARGGS MDNAIVLDEY RILNNDGLRY DDEFVKHKML DAIGDLYVIG HPLLAAYDAY KSGHGLNNAL LRELLAHEDS YEIVTFDDTQ KAPRGFAYET QTAFA
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