| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3453 |
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| Symbol | |
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| ID | 6281923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 3885740 |
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| End bp | 3886969 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642623027 |
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| Product | type II secretion system protein |
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| Protein accession | YP_001897067 |
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| Protein GI | 187925425 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0854257 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.00345677 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACACGG CTACGATCCA AAGACCACCG TCCTCCGACA TGCGTTTCAA ATGGCGTGGT
GTCGACGCCG ACGGCGTGCG GAAGAACGGC GCACTCATCG CGCCGGACGC AGCCGTCGCC
CGCTCGGTAC TCAAGCGCGA CAATCTGTTC ATCCTCGAAC TGACCGCGCA CGGGCCGGCA
CCGCGTCCCA CCACGCGCGC CGGGGACATC ACACTGTTCA CGCGCCAACT CGCCAGCCTG
CTGCGCGCGG GTCTGCCACT CGCGCCCGCG CTGGACCTGC TCGCGCAAGC CGAGACTTCG
CGGCGTCAAG GTATGGCGCG GATCGTCGGC GCTCTCGCGC GCGACATCAC CGGCGGCCTG
CGCTTTTCCG CGGCATTGCA ACGGCATCCC GCGCAATTCA ACGCGCTGTA TTGCCAGCTC
GTCGAAGTCG GCGAGGCGGC CGGCGCACTA GCAGCCGTCC TCGCCCGCAT CGCCGATGAC
CGCGAACGCG CCGCCGCGCA GCGCGCCAAA GTGCGCGCGG CACTCACCTA TCCCGTCGCG
ATCCTCGTGC TGGCGATGGC CATCACCGCG GCATTGCTCG TGTGGGTCGT GCCGACCTTC
AAACAGATCT TCGACGGCTT CGGCGCCAGG CTGCCCGCAC CCACGCAGTT CGTGCTGGCG
TTGTCGTCCG GTGTGGCGCG ATGGAGCATA CCGGCATTCG CCATGATCTT CGCAACGGGA
TCAGCAGCGA CGTTTCTACT GCGACATTCT GAAGCCGCGC GCATCCGCTT TGCGCGCGTA
TCGCTGACAA TACCGGTCGC CGGTCCGCTG CTGCGCACGT TATGCGCAGC GCGCTGGAGC
CGCGCGCTCG GCACTTTGTT GTCAGCCGGC ACGCCGTTGG CCGACGCGTT CGACTCGCTG
ACCCACGCCA CCGGCAACGC CTTCTTCGAC CGAGCCACCG TGGAAATCGC CGCGCGGCTG
CGGCGCGGCG AGCGGCTCGC CGCCGCAATG CGCGCGGCAC GCTGCTTTCC ACCGGAGGTC
GTGCAGCCGA TCGCGGTTGC CGAGGAGTCC GGAGCACTCG ACACCATGCT CATCGACGTG
GCGTCGCTGG CCGATCGTCA GGTAGACGAA AAGATCGGCA CGCTGTCGAG CCTATGCGAG
CCGCTCGTCA TCGTCGTGCT CGGCGCGCTG GTCGGCGGCC TCGTGATCGC GATGTATCTT
CCCATTATTC AACTCGGCAA CGTGGTGTAG
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| Protein sequence | MNTATIQRPP SSDMRFKWRG VDADGVRKNG ALIAPDAAVA RSVLKRDNLF ILELTAHGPA
PRPTTRAGDI TLFTRQLASL LRAGLPLAPA LDLLAQAETS RRQGMARIVG ALARDITGGL
RFSAALQRHP AQFNALYCQL VEVGEAAGAL AAVLARIADD RERAAAQRAK VRAALTYPVA
ILVLAMAITA ALLVWVVPTF KQIFDGFGAR LPAPTQFVLA LSSGVARWSI PAFAMIFATG
SAATFLLRHS EAARIRFARV SLTIPVAGPL LRTLCAARWS RALGTLLSAG TPLADAFDSL
THATGNAFFD RATVEIAARL RRGERLAAAM RAARCFPPEV VQPIAVAEES GALDTMLIDV
ASLADRQVDE KIGTLSSLCE PLVIVVLGAL VGGLVIAMYL PIIQLGNVV
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