| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3404 |
|---|
| Symbol | pyrF |
|---|
| ID | 6282559 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 3833588 |
|---|
| End bp | 3834403 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642622977 |
|---|
| Product | orotidine 5'-phosphate decarboxylase |
|---|
| Protein accession | YP_001897018 |
|---|
| Protein GI | 187925376 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0284] Orotidine-5'-phosphate decarboxylase |
|---|
| TIGRFAM ID | [TIGR02127] orotidine 5'-phosphate decarboxylase, subfamily 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0610032 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.088058 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAATT TCATCCAGAC ACTCAACGAC GCCTGGCAGC GCACCAACTC GCTGCTGTGC
GTCGGCCTCG ATCCCGAGCC GAGCAAATTC CCGGGCGCGC TCGCGGGCCG TCCCGAGGCG
ATCTTCGATT TCTGCCGCAC GATCGTCGAC GCGACCGCGC CGTATGCGTC CTCGTTTAAA
CCGCAGATCG CCTACTTTGC GGCGCATCGC GCGGAAGACC AGCTCGAGCA GCTGATCGCC
CACATTCATG CGAATCATCC GGGTCTGCCG GTGATTCTGG ATGCGAAGCG CGGCGACATT
GGCAGCACCG CCGAACAATA TGCGCGCGAG GCGTTCGAGC GCTACCAGGC GGACGCCGTG
ACGGTGAATC CGTACATGGG GTTCGACTCG ATCCAGCCGT ATCTGGAGCA TGCAGGCAAG
GGCGTGATCG TGCTGTGCCG CACGTCGAAC CCGGGCGGCT CCGATCTGCA ATTCCTGGAG
ACGGGCGGCC GTCCGCTGTA TCAGGTCGTC GCGCAACTGG CGGCGGAGAA ATGGAATGCG
AGCGGCCAAC TGAGTCTGGT GGTCGGCGCG ACTTTCCCGA AGGAAATCGA AGTGGTGCGG
GGGATTGTCG GCGATATGCC GCTGCTGATT CCTGGCATCG GCGCGCAAGG CGGCGACGTG
CAAGCGACCG TCAACGCCGG CCGCACCGCG AACGGCACGG GCATGCTGAT CAACTCGTCG
CGGGCGATTA TTTACGCGGG CAAGGGCGAC GATTTCGCCG AAGCCGCGGC GAAGGCCGCG
ATGGAAACGC GGGATCGGAT CAACGCGTTT AGGTGA
|
|---|
| Protein sequence | MPNFIQTLND AWQRTNSLLC VGLDPEPSKF PGALAGRPEA IFDFCRTIVD ATAPYASSFK
PQIAYFAAHR AEDQLEQLIA HIHANHPGLP VILDAKRGDI GSTAEQYARE AFERYQADAV
TVNPYMGFDS IQPYLEHAGK GVIVLCRTSN PGGSDLQFLE TGGRPLYQVV AQLAAEKWNA
SGQLSLVVGA TFPKEIEVVR GIVGDMPLLI PGIGAQGGDV QATVNAGRTA NGTGMLINSS
RAIIYAGKGD DFAEAAAKAA METRDRINAF R
|
|---|
| |