| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3402 |
|---|
| Symbol | |
|---|
| ID | 6282730 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 3832415 |
|---|
| End bp | 3832915 |
|---|
| Gene Length | 501 bp |
|---|
| Protein Length | 166 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642622975 |
|---|
| Product | CinA domain protein |
|---|
| Protein accession | YP_001897016 |
|---|
| Protein GI | 187925374 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1546] Uncharacterized protein (competence- and mitomycin-induced) |
|---|
| TIGRFAM ID | [TIGR00199] competence/damage-inducible protein CinA C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.109005 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0764099 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTACCG ATTCCGTCGT TCACCAGCTT GCGATTCGCG TGAGCAACCG TCTGCGCGAC
GAGCGCCTCA TGCTCGTCAC CGCTGAGTCC TGCACGGGCG GCATGGTGGC GACCGCGATC
ACCGATATTT CCGGCAGCAG CGGCTGGTTC GAGCGCGGCT TCGTCACGTA TTCGAATCAG
GCGAAGAGCG AGATGATCGG CGTGCCCGCC GAGTTGATCG ACAAACACGG CGCGGTCAGC
GAGCAGGTGG CGCGCGCGAT GGCCGAAGGC GCGCTGCGCA ACAGCCGCGC GCAGGTCTCG
TTGTCGATTA CCGGCGTGGC CGGACCGGGC GGCGGCACGG AGACCAAACC GGTCGGCATG
GTCTCGTTCG GCTGGAGCAA CCGGCTGCAT ACGTCGGTGG AAACGAAGGT TTTCAAGGGC
GACCGCGAGA AGATTCGCGT GCAGGCGGCC GCGCATGCGC TGCGCGGTGT GCTCGCTTTA
CTCGACGAAC GCGAGCACTA A
|
|---|
| Protein sequence | MPTDSVVHQL AIRVSNRLRD ERLMLVTAES CTGGMVATAI TDISGSSGWF ERGFVTYSNQ
AKSEMIGVPA ELIDKHGAVS EQVARAMAEG ALRNSRAQVS LSITGVAGPG GGTETKPVGM
VSFGWSNRLH TSVETKVFKG DREKIRVQAA AHALRGVLAL LDEREH
|
|---|
| |