| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3391 |
|---|
| Symbol | |
|---|
| ID | 6283703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 3820861 |
|---|
| End bp | 3822960 |
|---|
| Gene Length | 2100 bp |
|---|
| Protein Length | 699 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642622965 |
|---|
| Product | transketolase |
|---|
| Protein accession | YP_001897006 |
|---|
| Protein GI | 187925364 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0021] Transketolase |
|---|
| TIGRFAM ID | [TIGR00232] transketolase, bacterial and yeast |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0869549 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.000451317 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGCGCCAAA GTGAACCGGC ATTCGAGCAT CCGGGCCTCA AGCGCGCACC GCTTTCTGAC
TCTGTCTCCG GACTCGACAT GACGACCCCG TCTCCCGCAC CCACCTCCTT GATGGCCAAC
GCAATCCGCG CGTTGTCCAT GGACGCCGTT CAAAAAGCGA ATTCCGGCCA CCCCGGCATG
CCGATGGGCA TGGCCGAAAT CGGCGTGGCT TTGTGGTCGC GTCATCTGCG CCACAATCCG
AAGAACCCGC AATGGGCCGA TCGCGACCGT TTCGTGCTGT CGAACGGTCA CGGCTCGATG
CTGCTCTACT CGCTGCTGCA CCTGACCGGC TACGATCTGC CGATCGACGA GCTGAAGAAT
TTCCGCCAGA TGCATTCCAA GACGCCGGGT CACCCGGAAT ACGGCATTAC GCCGGGCGTC
GAGACGACCA CCGGCCCGCT CGGCCAGGGT CTGGCGAATG CGGTCGGCAT GGCGCTCGCC
GAGTCGCTGC TCGCCACTGA ATTCAACAAG CCTGACGCGA AGATCGTCGA CCACCACACG
TACGTGTTCG CCGGCGACGG CTGCCTGATG GAAGGCATCT CGCACGAAGC CTGCTCGCTG
GCGGGCGTGC TTAAGCTGAA CAAGCTGATC GCGTTCTACG ACGACAACGG CATCTCGATC
GACGGCGAAG TGGTGCACTG GTTCCACGAC GACACGCCCA AGCGCTTCGA AGCGTACGGC
TGGAACGTGA TCCCGAACGT GGTCGGCCAC GACGTCGAAG CGGTCGACGC GGCCATCAAG
CAAGCCAAGC AATCCGACAA GCCCACGCTG ATCTGCTGCA AGACGGTGAT CGGCGAAGGC
TCGCCGAACA AGGCCGGCAG CCACGATTCG CACGGCGCGG CGCTCGGCGA AAAGGAAGTC
GCGGCCACGC GCGAAAAGAT CGGCTGGAAG TGGGAGCCGT TCGTGATCCC GCAAGAAGTC
TACGCAGCGT GGGACGCGAA AGAAGCCGGC GCGCGCAACG AGTCCGAGTG GGACAAGGCG
TTTGCCGCGT ACGCAGCCAA ATATCCGCAG GAAGCTGCTG AATTCAAGCG CCGCGACGCG
AAGCAATTGC CCGCCGACTG GAAAGAAAAG GCCAAGGCAA TCATCGCCGG CGCGAACGAA
CGCGCTGAAA CCGTCGCGAC TCGCAAGGCG TCGCAGCAGG CTATCGAAGC TTTGTCGGCC
GTGCTGCCGG AACTGCTCGG CGGCTCCGCC GACCTGACCG GTTCGAACCT GACCAACTGG
AAGGCCGCCA AGCCCGTGCG TGTGAACGCG GAAGGCCAGG CCGCCGGCAA CTACGTCAAC
TATGGCGTGC GCGAATTCGG CATGAGCGCC GCGATCAACG GCGTCGCGCT GCACGGCGGC
TTCAAGGCTT TCGGCGGCAC GTTCCTGACG TTCTCGGACT ACAGCCGCAA CGCGCTGCGC
GTGGCCGCTC TGATGAAAGC GCCGTCGATC TTCGTGTTCA CGCACGACTC GATCGGTCTC
GGCGAAGACG GCCCGACTCA CCAGTCGATC GAACACGTTG CGAGCTTGCG TCTGATTCCG
CACCTGCAAG TGTGGCGTCC GGCTGATACC GTTGAGACCG CGGTGGCCTG GACCCACGCG
GTCGAGCATC ATGGCCCGTC GGCCCTGATC TTCAGCCGTC AGAACCTGCC GTTCTCGGAG
CGTACCGACG CGCAGATCGC CAACATCGAG AAGGGTGGTT ACGTGCTGCG CGACTGGAAC
GACGAAATCG TCGCGCGCAA GGTCATCCTG ATCGCCACCG GCTCGGAAGT CGAACTGGCG
CTGAACGCGA TCGAGCCGCT GGCGCGCGAA GGCATCGCGG CGCGCGTTGT GTCCATGCCG
TCGACCACCG TGTTCGACAA GCAGGACGCC GAGTACCGTG AACGCGTGCT GCCGCAAGGC
GTGCGCCGCG TCGCGATCGA AGCGGGCGTC ACGGATTTCT GGCGCAAGTA CGTGGGTCTG
GAAGGCGGCG TGGTCGGCAT CGACACGTTC GGCGAATCGG CCCCGGCGGG CGTGCTGTTC
AAGCATTTCG GCTTCACCGT CGAACACGTG GTAGAGACGG CAAAAGCCGC CCTCGGCTGA
|
|---|
| Protein sequence | MRQSEPAFEH PGLKRAPLSD SVSGLDMTTP SPAPTSLMAN AIRALSMDAV QKANSGHPGM
PMGMAEIGVA LWSRHLRHNP KNPQWADRDR FVLSNGHGSM LLYSLLHLTG YDLPIDELKN
FRQMHSKTPG HPEYGITPGV ETTTGPLGQG LANAVGMALA ESLLATEFNK PDAKIVDHHT
YVFAGDGCLM EGISHEACSL AGVLKLNKLI AFYDDNGISI DGEVVHWFHD DTPKRFEAYG
WNVIPNVVGH DVEAVDAAIK QAKQSDKPTL ICCKTVIGEG SPNKAGSHDS HGAALGEKEV
AATREKIGWK WEPFVIPQEV YAAWDAKEAG ARNESEWDKA FAAYAAKYPQ EAAEFKRRDA
KQLPADWKEK AKAIIAGANE RAETVATRKA SQQAIEALSA VLPELLGGSA DLTGSNLTNW
KAAKPVRVNA EGQAAGNYVN YGVREFGMSA AINGVALHGG FKAFGGTFLT FSDYSRNALR
VAALMKAPSI FVFTHDSIGL GEDGPTHQSI EHVASLRLIP HLQVWRPADT VETAVAWTHA
VEHHGPSALI FSRQNLPFSE RTDAQIANIE KGGYVLRDWN DEIVARKVIL IATGSEVELA
LNAIEPLARE GIAARVVSMP STTVFDKQDA EYRERVLPQG VRRVAIEAGV TDFWRKYVGL
EGGVVGIDTF GESAPAGVLF KHFGFTVEHV VETAKAALG
|
|---|
| |