Gene Bphyt_3389 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_3389 
Symbol 
ID6284655 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp3818946 
End bp3819638 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content63% 
IMG OID642622963 
ProductGntR domain protein 
Protein accessionYP_001897004 
Protein GI187925362 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.422325 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.000247854 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAAAACG TCCCGCATAC CGTTACCGAT GCCGCCATCG CGACCATCCG CGAGCGGATC 
GAAGCGGGCG TCTATCCCGT GGGCAGTCTG CTGCCGGCGC AGCGTCAACT CTCCGAAGAA
CTCGCGATCA GTCGCGCGTC GTTGCGCGAA GCGCTTTCGA CGCTCGAAGC GCTCGGTCTG
CTGGTGATCC GGCCCGGTAA GGGTGTGTAC GTGGAAAGCG CGCAGGCCTC GGCCGCGCAT
GCATGGCGGT TTGCAGAGCA GTCGTCGCTG CCGGACACTT ATCAGATGCG CTTCGCGCTG
GAAGGCTTTA TCGCGCGCAT GGCGGCGCTG GCGGTCAGCG ATTCCGACCT CGCCTGGTTC
GAAGACAACA TCACAGCCAT GCAAACGGCG CTTGCCTGCG ACGAACTCGA CGAAGCCGCC
CGCCTCGACT ACGACTTCCA CATGCGGATC GTCAACATTG CCGGCAACGC GGCGATCGAA
TCGATTCTGA GCAGCAGTGC GGAAATCATG AAGGAAAGCC AGCGCATGCC GTTCTACCGG
CGCGAACTGG TGCTGTCCAC GTACAACGAG CATCGCGTGA TTCTGGATGC GCTCAAGGCG
CGCGATTCGG CCGCGGCCGG CAAAGCAATC GAGACGCATA TTTCGAACGC CGCGCAGCGC
GCAGGCGTCT ATTTCCCGAC GCCGCAAGCG TAA
 
Protein sequence
MKNVPHTVTD AAIATIRERI EAGVYPVGSL LPAQRQLSEE LAISRASLRE ALSTLEALGL 
LVIRPGKGVY VESAQASAAH AWRFAEQSSL PDTYQMRFAL EGFIARMAAL AVSDSDLAWF
EDNITAMQTA LACDELDEAA RLDYDFHMRI VNIAGNAAIE SILSSSAEIM KESQRMPFYR
RELVLSTYNE HRVILDALKA RDSAAAGKAI ETHISNAAQR AGVYFPTPQA