Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_3389 |
Symbol | |
ID | 6284655 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | + |
Start bp | 3818946 |
End bp | 3819638 |
Gene Length | 693 bp |
Protein Length | 230 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642622963 |
Product | GntR domain protein |
Protein accession | YP_001897004 |
Protein GI | 187925362 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.422325 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.000247854 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAAACG TCCCGCATAC CGTTACCGAT GCCGCCATCG CGACCATCCG CGAGCGGATC GAAGCGGGCG TCTATCCCGT GGGCAGTCTG CTGCCGGCGC AGCGTCAACT CTCCGAAGAA CTCGCGATCA GTCGCGCGTC GTTGCGCGAA GCGCTTTCGA CGCTCGAAGC GCTCGGTCTG CTGGTGATCC GGCCCGGTAA GGGTGTGTAC GTGGAAAGCG CGCAGGCCTC GGCCGCGCAT GCATGGCGGT TTGCAGAGCA GTCGTCGCTG CCGGACACTT ATCAGATGCG CTTCGCGCTG GAAGGCTTTA TCGCGCGCAT GGCGGCGCTG GCGGTCAGCG ATTCCGACCT CGCCTGGTTC GAAGACAACA TCACAGCCAT GCAAACGGCG CTTGCCTGCG ACGAACTCGA CGAAGCCGCC CGCCTCGACT ACGACTTCCA CATGCGGATC GTCAACATTG CCGGCAACGC GGCGATCGAA TCGATTCTGA GCAGCAGTGC GGAAATCATG AAGGAAAGCC AGCGCATGCC GTTCTACCGG CGCGAACTGG TGCTGTCCAC GTACAACGAG CATCGCGTGA TTCTGGATGC GCTCAAGGCG CGCGATTCGG CCGCGGCCGG CAAAGCAATC GAGACGCATA TTTCGAACGC CGCGCAGCGC GCAGGCGTCT ATTTCCCGAC GCCGCAAGCG TAA
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Protein sequence | MKNVPHTVTD AAIATIRERI EAGVYPVGSL LPAQRQLSEE LAISRASLRE ALSTLEALGL LVIRPGKGVY VESAQASAAH AWRFAEQSSL PDTYQMRFAL EGFIARMAAL AVSDSDLAWF EDNITAMQTA LACDELDEAA RLDYDFHMRI VNIAGNAAIE SILSSSAEIM KESQRMPFYR RELVLSTYNE HRVILDALKA RDSAAAGKAI ETHISNAAQR AGVYFPTPQA
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