| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3360 |
|---|
| Symbol | |
|---|
| ID | 6283959 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 3778539 |
|---|
| End bp | 3779216 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642622934 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_001896975 |
|---|
| Protein GI | 187925333 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0159961 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00000222316 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCACCATT TCGACTGGAG CGGTATTCCG GGCGCATTGC CTACGCTGTG GACCGGCGCC
ATTGTCACGT TCAAGATCAC GCTGATCGCG ATCGTGTTCG GCATCGTCTG GGGCACCATT
CTCGCCATGA TGCGGCTGTC GTCGTTCAAA CCCTTCGAGT GGTTCGCGAA GGGTTACGTG
ACGATCTTCC GTTCCATCCC GCTGGTGATG GTGCTGCTGT GGTTCTTCCT GATCGTGCCG
CAGGTGCTGC AAAACGTGCT CGGTTTGTCG CCGGATATCG ACATTCGCCT CGCGTCGGCC
ATGGTCGCGT TCTCGCTGTT CGAGGCGGCT TACTATTCGG AGATCATCCG CGCCGGCATT
CAGTCGGTGG CGCGCGGGCA GGTCAACGCT TCGTTCGCGC TCGGCATGAC GTACGCGCAG
TCCATGCGTC TGATCGTGCT GCCGCAGGCG TTCCGCGCCA TGGTCCCGCT GCTGCTCACG
CAAGGCATCG TGCTGTTTCA GGATACGTCG CTCGTCTACG TGATCAGCCT CGCCGACTTC
TTCCGCACCG CCACGAATAT TGGCGACCGT GACGGTACGA ATGTCGAGAT GGTACTGTTC
GCGGGCGCGT GTTATTTCGT GATCTGTGTG GTCGCGTCGA GCCTCGTCAA AGGTCTTCAG
AAAAAGGTCG CAAGATGA
|
|---|
| Protein sequence | MHHFDWSGIP GALPTLWTGA IVTFKITLIA IVFGIVWGTI LAMMRLSSFK PFEWFAKGYV
TIFRSIPLVM VLLWFFLIVP QVLQNVLGLS PDIDIRLASA MVAFSLFEAA YYSEIIRAGI
QSVARGQVNA SFALGMTYAQ SMRLIVLPQA FRAMVPLLLT QGIVLFQDTS LVYVISLADF
FRTATNIGDR DGTNVEMVLF AGACYFVICV VASSLVKGLQ KKVAR
|
|---|
| |