Gene Bphyt_3301 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_3301 
Symbol 
ID6284517 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp3718653 
End bp3720191 
Gene Length1539 bp 
Protein Length512 aa 
Translation table11 
GC content64% 
IMG OID642622875 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_001896916 
Protein GI187925274 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.970656 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTTCCG ACACTCCGGC GGCCAACGCC GCCGCGCCGC TCAACCGCCC GATGATCACC 
GTCTCGATCA TGCTGGCGAC GTTGATCCAG ACGCTCGACA GCACGATCGC CAACGTGGCG
CTGCCGCATA TGCAGGGCAC GCTGTCCGCG TCGCAGGATG AAATCACGTG GGTGCTGACC
TCGTACATCG TCGCCGCCGC GATCGCCACG CCGCTCACCG GCTGGCTGTC CGACCGGCTG
AGCGTCAAGC GTCTGCTGAT TTTCGCGATC GGCGGTTTCA CGGTGTCGTC GGCGCTGTGC
GGTTTGTCTG AGACGCTCAC GCAGATCGTC GCGTCGCGTT TGCTGCAGGG GATTTTCGGC
GCGTCGCTCG TGCCGCTGTC GCAGTCAATC CTGCTCGACA TCAACCCGCG CGAGAAGCAG
GGGCAGGCCA TGGCCGTGTG GGGCATGGGC GTGATGGTCG GACCGATTCT CGGGCCGACG
CTCGGCGGCT GGCTCACAGA CAGCTACAAC TGGCGCTGGG TGTTTTTCAT CAACGTGCCG
ATCGGCGCGT TCGCGCTGTT CGGCGTGGCG ACCTTCCTGC CCGCGCGCGA ACCGAAACAC
GACGCGAAGT TCGACGCCTT CGGCTTCGCC ACGCTGGGTC TCGCCATCGG CGCATTGCAG
GCCATGCTCG ATCGCGGCGA GCAACTCGAC TGGTTCGGCT CGAACGAAAT CGTTGTCGAG
GCGCTGCTCG CGGCGATCAG CTTTGCGTTT TTCCTCGTGC ACACGGCCAC GGTCGGCAAG
AAATCGTTTT TCAAATACGA GTTGCTGAAG GATCCGAACT TCGCCACGGG GACGTTTTTC
ATCTTCGTGA TCGGCGCGGT AATGTACGCG ACGCGCGCGT TGCTGCCGCC CATGCTGCAG
AACCTGATGA ACTATCCGGT CGCGACCACC GGCCTCGTCA CTGCGCCGAG CGGCGCGGGC
ACGATGGTCG CCATGCTGTT CGCCGGGCGC CTGCTGAAGC GGATCGACGC GCGGCTTCTG
CTGCTGGCGG GCTTTCTGAT CTCGGCGTTC GCGCTCTGGC AGATGATGCA TTACACGATC
GTGCTGTCGG CGCCGGACAT TGTCTGGCCC GGCGTGATTC AGGGCTTCGG GCTTGGGCTC
GTGTTCGTGC CGCTGAGCGC GCTGACCTTC TCGACGCTCA CGCCGGAACT GCGCGCGGAT
GGCACCGCGA CGTACAGCCT GATGCGCAAT ATCGGCAGCA GTATCGGCAT TTCGATCGTG
CAAACGCTGA TGACGCGCAA CACGCAGGTC TCGCATGCGG ACCTCGTGGC CAACATCACG
CCCTTCAATC CCGCCGTCCA GCCGATGCTC AACAACGGCT CGAATTACGA CATGGCCGCG
CTGAACGCGT CGATCACGCA GCAGGCATCG ATGATCGCGT ATCTGAACGA CTTCAAGCTG
ATGTTCATGG CGACGCTGCT GGTTATTCCG CTTCTGCTGT TGATCCGCCC CGCGCATAAG
GCGGCGGACG CCTCGGTGGC GCATGCCGCG ATGGATTGA
 
Protein sequence
MSSDTPAANA AAPLNRPMIT VSIMLATLIQ TLDSTIANVA LPHMQGTLSA SQDEITWVLT 
SYIVAAAIAT PLTGWLSDRL SVKRLLIFAI GGFTVSSALC GLSETLTQIV ASRLLQGIFG
ASLVPLSQSI LLDINPREKQ GQAMAVWGMG VMVGPILGPT LGGWLTDSYN WRWVFFINVP
IGAFALFGVA TFLPAREPKH DAKFDAFGFA TLGLAIGALQ AMLDRGEQLD WFGSNEIVVE
ALLAAISFAF FLVHTATVGK KSFFKYELLK DPNFATGTFF IFVIGAVMYA TRALLPPMLQ
NLMNYPVATT GLVTAPSGAG TMVAMLFAGR LLKRIDARLL LLAGFLISAF ALWQMMHYTI
VLSAPDIVWP GVIQGFGLGL VFVPLSALTF STLTPELRAD GTATYSLMRN IGSSIGISIV
QTLMTRNTQV SHADLVANIT PFNPAVQPML NNGSNYDMAA LNASITQQAS MIAYLNDFKL
MFMATLLVIP LLLLIRPAHK AADASVAHAA MD