Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_3236 |
Symbol | |
ID | 6283530 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | - |
Start bp | 3645098 |
End bp | 3646051 |
Gene Length | 954 bp |
Protein Length | 317 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642622809 |
Product | periplasmic binding protein/LacI transcriptional regulator |
Protein accession | YP_001896851 |
Protein GI | 187925209 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.382931 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCAAT CCCTTTCGAA GCCGACCTCG TTGAAGACTT TCGCACGCAG CACGGCGGCA CTGGCGACGC TCGCTTTCGG CTTGTCGTTC ATCGCCGCGC CGGCTGCGCA AGCCGCGCCG CTGAAAATCG GCATGACGTT TCAGGAGCTG AACAACCCGT ACTTCGTGAC GATGCAAAAA GCGCTGAACG ACGCGGCTGC TTCCATCGGC GCAACGGTTG TCGTCACCGA CGCGCACCAC GATGTCAGCA AGCAGGTTAG CGACGTGGAA GACATGCTGC AGAAGAAGAT CGACATCCTG CTCGTGAATC CGACCGATTC GACCGGCATC CAGTCGGCGG TGACCTCGGC GAAGAAAGCC GGCGTGGTGG TGGTCGCCGT CGATGCGAAC GCCAACGGTC CGGTCGATTC GTTCGTCGGT TCGAAGAACT ACGACGCGGG CGAGATGGCT TGCGAGTATC TGGCGAAGTC GATTGGCGGC AGCGGTGAAG TGGCGATTCT CGACGGCATT CCGGTCGTGC CGATTCTCGA ACGCGTGCGG GGCTGCAAGG CGGCGCTCGC GAAAGCGCCC GGCGTGAAGC TCGTGGATAC GCAGAACGGT AAGCAGGAAC GCGCAACCGC GTTGTCCGTC ACCGAGAACA TGATTCAGGC GCATCCGAAT CTGAAGGGCG TGTTCAGCGT GAACGACGGC GGCTCGATGG GTGCGCTCTC GGCGATCGAA TCGTCGGGCA AGGACATCAA GCTGACCAGC GTCGACGGCG CGCCGGAAGC GATTGCCGCG ATCCAGAAGC CGAATTCGAA GTTCGTCGAA ACGTCCGCGC AATTCCCGGC CGACCAGGTG CGCATTGCAC TCGGCATCGC GCTCGCGAAG AAGTGGGGCG CCAATGTGCC GAAGACCATT CCTGTCGACG TGAAGATGAT CGACAAGAGC AATGCCAAGG GTTTCAGCTG GTAA
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Protein sequence | MTQSLSKPTS LKTFARSTAA LATLAFGLSF IAAPAAQAAP LKIGMTFQEL NNPYFVTMQK ALNDAAASIG ATVVVTDAHH DVSKQVSDVE DMLQKKIDIL LVNPTDSTGI QSAVTSAKKA GVVVVAVDAN ANGPVDSFVG SKNYDAGEMA CEYLAKSIGG SGEVAILDGI PVVPILERVR GCKAALAKAP GVKLVDTQNG KQERATALSV TENMIQAHPN LKGVFSVNDG GSMGALSAIE SSGKDIKLTS VDGAPEAIAA IQKPNSKFVE TSAQFPADQV RIALGIALAK KWGANVPKTI PVDVKMIDKS NAKGFSW
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