| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3178 |
|---|
| Symbol | |
|---|
| ID | 6281505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 3581073 |
|---|
| End bp | 3583256 |
|---|
| Gene Length | 2184 bp |
|---|
| Protein Length | 727 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642622752 |
|---|
| Product | oligopeptide/dipeptide ABC transporter, ATPase subunit |
|---|
| Protein accession | YP_001896794 |
|---|
| Protein GI | 187925152 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
[COG4608] ABC-type oligopeptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.00139803 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAACGGCC CGCCGCCCTC CTCGTTCCCC GCCTTCGACG TCTCGAAGAG CGACCGCACG
GACGCGCTGA CCGTCGTCGG CCTGACGGTC ACGTACCGGA TACGCGGACG CGATCGCGAA
GTGCTGCAGG ACATTTCGTT TCGCGTGCGG CGCGGCGAAG CATACGGTCT CGTGGGCGAG
TCCGGCTGCG GCAAATCGAC GGTCGCGATG GCGGCGCTGC GCTATCTGCC GCGCAATGGC
AAGGTGAAGG CAGGCAAGAT CATCATCGCC GGCGAGGACG TGCAGAAGCT TAACGCCGAC
GCGTTGCGCA ACATGCGCGC GAACGCGATT TCGATGGTCT ATCAGGATCC GGGGCGTGCG
CTGAATCCGT CGCTGACGAT CGCGCGGCAA GTCTCCGAAG CGTTCGAAGC CGCCGGTGTC
GCGCGCGACG AAGCCTTGCG GCGCACGCTC GAGATGCTGC AGCGCGTACG CATTGCCGCG
CCCGAGCGGG TGATGGAGAG TTATCCACAT CAATTGTCGG GCGGCATGCA ACAGCGCGTG
GTGATCGCCA TGGCGCTCGC CTCGAACCCC GCACTGCTGA TTCTCGACGA ACCGACCACC
GGGCTCGATG CGACCGTCGA AGCGGAAGTG CTCGACCTCG TCGCGCAGTT GCGCAAAGAG
CTCGGCACGG CGGTGCTCTT CATCAGTCAC AACCTCGCGG TGATCGGGCG CATGTGCGAA
CGCGTCGGCG TGCTTTACGC GGGCAAACTG GTCGAAGAAG GCGCGACGCA AGATGTCTTC
ACGCGGCCGC GTCATCCGTA TACGGTCGGG CTGTTGCGCT GTTTGCCCAC AACTGGGCGC
AGCAAGGACA GCGAACGGCT CGATACGATC GCGGGCAGTT TGCCCTCGCC CGGTTCGGTC
ACGCAGGGCT GCATCTACGC GGACCGCTGC CGCCTCGCCG ACGACCGCTG CCGCCGCGAA
GCGCCGCCGC CGTATCGCGT GAGCGCCGCG CGCGGCGACC AGATGTCGCG CTGTCATTAC
CACGAGCGCG CGATCGACTT GCCGCGTGCG AGCGCGGAAG CTTTGCCCGA GCGCAGTGAT
GCGCCGGTCG ACGGCAAGCC CCCTGCTCTC GTGCTGCGGG CAGAAAGACT CTCGAAGACC
TTTCACGTGT CCGGCGCTGC GCTGCGTGCG GTCGACAACG TCTCGATCGA TCTCGCGAGC
GGCGAAACGC TTGGCCTCGT CGGCGAATCG GGCAGCGGCA AAACGACGCT CGCCAAGCTC
ATGCTCGGCC TGCTCACGCC GGATGCGGGC AGCGTGCTCG AACTCGACGG CGCGCCGCTC
GCCGCGCGCG TCACGCGGCG CAACACCGAG CAGGTCAAGT CGCTGCAGAT CGTTTTTCAG
AATCCGGACT CCGCGCTCAA TCGCGCGCAT TCGGTGAAAC GGCTGATCGG CCGCGCGCTG
TCGCGTCTCA CCGCATTGCG CGGGCCGGCC ATCGACGAAC GGCTTGCCGC GTTGACGGAC
GCCGTGCGCC TGCCGCAGCG CTATCTCGGC TCACGCACGC GGCAACTGTC CGGCGGGCTC
AAACAGCGGG TGGCGATTGC GCGCGCGTTT GCCGGCGAAC CGCGCGTGGT GGTCTGCGAC
GAACCGACTT CCGCGCTCGA CGTCTCCGTG CAGGCCGCGA TCCTGAACCT GCTCGCTGAT
CTGCAACGTG AGCGCGGAGT CAGTTACGTT TTCATCTCGC ACGATCTTCA CGTCGTGCGC
TATCTGGCGG ATCGTATCGC GGTGCTGTAT CTGGGGAGGC TGCTGGAAAT CGGACCGGCA
GCGGCCGTGT TCGAAGGACC GCATCATCCT TATACAGAAG CATTGCTGTC CTCGGTGCCG
ACACTCGACG GCCAAGGCGG CGCGACCCGT ATCCACCTGT CCGGCGATTT GCCGAGTGCG
GCATCGCCGC CGTCCGGCTG CGTGTTTCAT ACACGCTGCC CGCGCAAGCT CGGCGCGATC
TGCGAGCAGC AGGACCCGCC GTTCGTCGAT GCCGGCGAAG GCGAGGCGGC GATGCCGTCC
GCGCATCGAA TCCGCTGCCA CATCCCCGTT GACGAATTGC GCGCGCTGCA AACTGCTTCG
CGCGGCGATG CGGGACAAGT CGCGGGCAAG GTGCTTGGCG ACGGATCAGA AAACGCGCCC
GAGAACGCGG GGCGTGACGA GTAA
|
|---|
| Protein sequence | MNGPPPSSFP AFDVSKSDRT DALTVVGLTV TYRIRGRDRE VLQDISFRVR RGEAYGLVGE
SGCGKSTVAM AALRYLPRNG KVKAGKIIIA GEDVQKLNAD ALRNMRANAI SMVYQDPGRA
LNPSLTIARQ VSEAFEAAGV ARDEALRRTL EMLQRVRIAA PERVMESYPH QLSGGMQQRV
VIAMALASNP ALLILDEPTT GLDATVEAEV LDLVAQLRKE LGTAVLFISH NLAVIGRMCE
RVGVLYAGKL VEEGATQDVF TRPRHPYTVG LLRCLPTTGR SKDSERLDTI AGSLPSPGSV
TQGCIYADRC RLADDRCRRE APPPYRVSAA RGDQMSRCHY HERAIDLPRA SAEALPERSD
APVDGKPPAL VLRAERLSKT FHVSGAALRA VDNVSIDLAS GETLGLVGES GSGKTTLAKL
MLGLLTPDAG SVLELDGAPL AARVTRRNTE QVKSLQIVFQ NPDSALNRAH SVKRLIGRAL
SRLTALRGPA IDERLAALTD AVRLPQRYLG SRTRQLSGGL KQRVAIARAF AGEPRVVVCD
EPTSALDVSV QAAILNLLAD LQRERGVSYV FISHDLHVVR YLADRIAVLY LGRLLEIGPA
AAVFEGPHHP YTEALLSSVP TLDGQGGATR IHLSGDLPSA ASPPSGCVFH TRCPRKLGAI
CEQQDPPFVD AGEGEAAMPS AHRIRCHIPV DELRALQTAS RGDAGQVAGK VLGDGSENAP
ENAGRDE
|
|---|
| |