| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3129 |
|---|
| Symbol | |
|---|
| ID | 6284438 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 3523216 |
|---|
| End bp | 3524136 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642622703 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001896745 |
|---|
| Protein GI | 187925103 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.428379 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAATT TCCTCGTCAA ACGTCTCTTT GGCCTGCTGC CGACGCTTTT CATCGTCGCC
GTGCTGGTGT TCCTGTTCGT GCATATGCTG CCGGGCGATC CGGCGCGGCT CGCCGCCGGT
CCCGATGCGG ACGAGGCGAC TGTCGCGCTG GTGCGTGCCG ACCTCGGCCT CAATAAGCCG
ATGCCGCAGC AATTCGCCAG CTTCTTCGTG AAGATCGCGC ACGGCGACTT CGGCATTTCG
ACGCGCAGCA AGCGCCCGGT CAGCCAGGAA ATCGGCGAGC GCTTCATGCC GACGCTGCTG
CTCACGCTCG CCAGCATGGT GTGGGCGGTC GTGCTGGGCA TGGGCATCGG CATCGTCTCG
GCTGTGTGGC GCAACCGCTG GCCGGACCGG CTCGGCATGA CGCTCGCGGT GTCGGGTATT
TCGTTTCCCG CCTTCGCGCT CGGCATGCTG CTGATGGAGA TTTTTTCGGT GAAGCTCGGC
TGGCTCCCGA TTGTCGGCGA CGGTTCGTGG CAGAGCTACG TGTTGCCGTC GCTCACGCTC
GGCGCGGCCG TCGCGGCGGT GATGGCGCGC TTCACGCGGG CGTCGTTCGT CGAAGTGATG
AACGAAGACT TCGTGCGGAC CGCGCGCGCC AAGGGCGTGC CCGAGCGTCT CGTGATCGTC
AAACACTGCC TGCGCAACGC GATGATTCCC GTCATCACGA TGATGGGTCT GCAATTCGGT
TTTCTGCTGG GCGGTTCGAT CGTAGTCGAA GTGGTGTTCA ACTGGCCGGG CCTCGGACGC
CTGCTGGTGG ATGCCGTTTC GATGCGTGAC TATCCGGTGA TTCAGGCTGA AGTGCTGTTG
TTCTCGCTGG AATTCATCAT CATCAATCTG GTCGTGGACG TGCTGTACGC CGTGATCAAC
CCCACCATCC GTTTCAAGTG A
|
|---|
| Protein sequence | MLNFLVKRLF GLLPTLFIVA VLVFLFVHML PGDPARLAAG PDADEATVAL VRADLGLNKP
MPQQFASFFV KIAHGDFGIS TRSKRPVSQE IGERFMPTLL LTLASMVWAV VLGMGIGIVS
AVWRNRWPDR LGMTLAVSGI SFPAFALGML LMEIFSVKLG WLPIVGDGSW QSYVLPSLTL
GAAVAAVMAR FTRASFVEVM NEDFVRTARA KGVPERLVIV KHCLRNAMIP VITMMGLQFG
FLLGGSIVVE VVFNWPGLGR LLVDAVSMRD YPVIQAEVLL FSLEFIIINL VVDVLYAVIN
PTIRFK
|
|---|
| |