| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3099 |
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| Symbol | |
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| ID | 6283040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 3491753 |
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| End bp | 3492904 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642622671 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_001896715 |
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| Protein GI | 187925073 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.791312 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTCGC AAACCGATTT CGTCCATATG GAACGCGCGC TCGCGTTGGC CAAGCGCGGC
ATGTACACCA CCGACCCGAA TCCGCGGGTC GGCTGCGTGC TCGTCAAGAA CGGCGAGGTG
ATCGGCGAAG GCTTTACGCA ACCGGCCGGC CAGGACCATG CCGAGATCCG CGCGCTGAAA
GACGCCCGCT CGCGCGGTCA CGATCTGCGC GGGGCCACGG CCTACGTGAC GCTGGAGCCG
TGCAGCCATT TCGGGCGCAC GCCGCCGTGC GCGAATGCTT TGATCGAAGC CCAGGTCGCG
CGTGTTGTCG CGGCAATGGA AGATCCCAAT CCGCAGGTAT CCGGGCGCGG TCTCGCCATG
TTGCGCGACG CCGGCATCGA AGTACGCTGT GGACTGTTGG CCCACGAAGC GCACGAACTC
AATATCGGCT TCGTCTCGCG CATGACACGC GGCCGCCCGT GGGTACGCAT GAAGGTGGCG
GCCTCGCTGG ATGGACGCAC CGGCTTGCCT TCGGGCGACA GCCAATGGAT CACTGGCGAA
GCGGCGCGCG CCGACGGCCA CGCCTGGCGC GCCCGCGCGT CGGCGATTTT GACGGGCATC
GGCACGGTCA GGGAGGACAA TCCGCGCATG ACGGTGCGGG CTGTCGATAC GCCGCGCCAG
CCGCAACGCG TACTGATAGA CAGCCAGCTC GACGTGCCGC CGGACGCACA GATTCTGGCC
GGCGCATCCA CGCTGATCTT CTGCGGCAAT CTGGATGGGC GACATACCGA TCGCGCCGCC
GCGTTGCGCG ATCGCGGCGC GGAGATCGTC CAATTGGCGA ACCCGGCCGG CAAGGTCGAT
CTGCCTGCGG TGCTCAAAGT GCTCGGCCAG CGCAACGTCA ACGAACTGCA TGTCGAGGCG
GGCTACAAGC TGAACGGCTC GCTGCTGCGC GAAGGCTGCG TCGATGAATT GCTCGTGTAT
CTCGCGCCGA GCCTGCTCGG CATGGATTCG ATGAGTATGT TCAATCTGAG CGCGCCCGAA
ACGCTCGAGG GCCGCGTCAA ACTGAACTTC CATGCGGTCG ACCGGATCGG CGAAGATGTG
CGGATTCTCG CGCGCTTTAT GCCCCAACCC GGACCCGGCA ACGAGCCCGC GACCCCACCC
GTTTCGAAAT GA
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| Protein sequence | MFSQTDFVHM ERALALAKRG MYTTDPNPRV GCVLVKNGEV IGEGFTQPAG QDHAEIRALK
DARSRGHDLR GATAYVTLEP CSHFGRTPPC ANALIEAQVA RVVAAMEDPN PQVSGRGLAM
LRDAGIEVRC GLLAHEAHEL NIGFVSRMTR GRPWVRMKVA ASLDGRTGLP SGDSQWITGE
AARADGHAWR ARASAILTGI GTVREDNPRM TVRAVDTPRQ PQRVLIDSQL DVPPDAQILA
GASTLIFCGN LDGRHTDRAA ALRDRGAEIV QLANPAGKVD LPAVLKVLGQ RNVNELHVEA
GYKLNGSLLR EGCVDELLVY LAPSLLGMDS MSMFNLSAPE TLEGRVKLNF HAVDRIGEDV
RILARFMPQP GPGNEPATPP VSK
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