| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3028 |
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| Symbol | |
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| ID | 6282085 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 3414995 |
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| End bp | 3416857 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642622596 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001896644 |
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| Protein GI | 187925002 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0457] FOG: TPR repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.985806 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.0142271 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCATCCC CCGTCATGCA ACCTGTATTT GACCGCGCTT TTGCGGCGCA TCGTGACGGC
CGCCTCGACG ACGCCGAACG CGGCTACCGC GCGACGCTCG ACGGCAATCC CGCGCACGTC
GATGCGTTGC ACCTGCTGGG CGTCCTGCGC CACCAGCAGG GCCAGCACGC CGAAGCCGCC
GAGCTCGTGC GGCGCGCAGT GAACCTGCGT CCGGAAGACG CCGCGCTGCA ACTGAACCTG
GGCAACGCGC TGAAAGCGCT GGGCCAGATC GACGACGCCA TCGAACAGTT CCGCAACGCG
CTGACGCTCG CGCCGTCGTT CCCGATGGCG CACTACAACC TCGGCAATGC CTACGCCGCC
GCGGGCCGTC ATGAAGACGC CGCCGATGCG TTCGAAAAGT CGTTGCGGCT GCAACCGGAC
GACGCTTCGT CGCACAACAA CTTCGGCAAT GCGCTGCATG CGCTCGGGCG CCATACGGAA
GCCATCGCCG CGTTCCGGCG CACGATCGAA CTGCGTCCCG GACACGCCGG CGCGCTCAAT
AACATGGGCA TGTCGCTGAA CGCGCTCGGC CGCGCGGAAG AAGCGATCCC GTGTTTCCAG
ACGGCGTTGG CGGCCGAACC GCGCTTCGTC GCCGCGCACT TCAATCTCGC CAACACCTTC
GACGCCACCG GCCGCCATGC CGAAGCCGTC GCGTCGTTCA AGGCGGCGCT GGCTTTGCAG
CCGAACCTGC CGCCGGCGAT CTTCGGCATG GGTAACGCGC TCGCGGCATT GGGACGCCAC
GCCGAGGCGC TGCCGTATCT GGAACGCGCC GTCGGTCTCG ATCCGCAATT CGCGCTCGCG
TGGCTGAGTC TGGGCACCGC GCATCAGGCG CTGGGCGCGC ATGGCCCCGC CGTGCGTGCG
CTGGATCAGG CGCTGCGTCT GCGTCCCGAT CTTGCCTCCG CGCATATGAA CCGCGCACTC
GCGTGGCTCG CGCAGCGCGA TTTCGCGCGC GGGCTGCCGG AGTACGAATG GCGCCTGCAA
ACCATGGCGC AGCCGGTGAT CCAGACGCTG CCGCGCTGGC ACGGCGAGCC GATCGCCGAA
CGTACGCTGC TGGTTCACGC CGAGCAGGGT TTCGGCGATA CGCTGCAATT CGTGCGCTTC
GTCCCGCTGG TTGCGCAGCG TGCGGCGCGC GTCGTACTCG AAGTGCAGCC GCAACTGCTG
CCCTTGCTGG CCCCGGCCGC GCAGGCCTGG CGCGTGACGC TGATCGCCCA GGGCGCGCCG
CGTCCCGCCG CCGACCTGCA CTGTCCGCTG CTGAGCCTGC CGCTCGCACT CGGCACGACC
TTCGACACCA TTCCGCAGCG CACGCCCTAT CTCAGCGTGC CGGCCGCCTA CGGCCGCAAA
TGGCGCGGCT CGCTCGGCGG CCAGGCCAAG CGCAAGATCG GCATCGCGTG GTCGGGACGC
ATCCAGCAAA ACGAAACGCG TTCGATGCAG CTTGCCGCGC TCGATCCGTT GTTCGCACTC
GAAGGCATCG ATTGGATCGT GCTGCAGCCC GAGTTGAGCG CCGAGGAACG CATGGCGCTC
GACACGCATC CGCGCGCGGC GTCGATTCAT CGCTTCGACA AGCGGATCGG CGACTTCGCG
GACACGGCGG CGATCATCGA ACGGCTCGAC GCGGTGGTGT CGATCGATAC ATCTATCGCG
CACGTTGCCG GCGCGCTGCG CAAGCCGCTG TGGTTGATGC TGCCGTTCGC GGCGGATTGG
CGCTGGTTTG CCGGCGAAAC AGGCAGCCCT TGGTATCCGG GCGCAACGCT GGTGCGTCAG
CCGCAGCCCG GCGCGTGGGG GGATGTCGTC GAGGCCGTGG CGAACGCGTT GCGCAAGGGT
TAG
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| Protein sequence | MPSPVMQPVF DRAFAAHRDG RLDDAERGYR ATLDGNPAHV DALHLLGVLR HQQGQHAEAA
ELVRRAVNLR PEDAALQLNL GNALKALGQI DDAIEQFRNA LTLAPSFPMA HYNLGNAYAA
AGRHEDAADA FEKSLRLQPD DASSHNNFGN ALHALGRHTE AIAAFRRTIE LRPGHAGALN
NMGMSLNALG RAEEAIPCFQ TALAAEPRFV AAHFNLANTF DATGRHAEAV ASFKAALALQ
PNLPPAIFGM GNALAALGRH AEALPYLERA VGLDPQFALA WLSLGTAHQA LGAHGPAVRA
LDQALRLRPD LASAHMNRAL AWLAQRDFAR GLPEYEWRLQ TMAQPVIQTL PRWHGEPIAE
RTLLVHAEQG FGDTLQFVRF VPLVAQRAAR VVLEVQPQLL PLLAPAAQAW RVTLIAQGAP
RPAADLHCPL LSLPLALGTT FDTIPQRTPY LSVPAAYGRK WRGSLGGQAK RKIGIAWSGR
IQQNETRSMQ LAALDPLFAL EGIDWIVLQP ELSAEERMAL DTHPRAASIH RFDKRIGDFA
DTAAIIERLD AVVSIDTSIA HVAGALRKPL WLMLPFAADW RWFAGETGSP WYPGATLVRQ
PQPGAWGDVV EAVANALRKG
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