| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3023 |
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| Symbol | |
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| ID | 6282301 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 3408131 |
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| End bp | 3411079 |
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| Gene Length | 2949 bp |
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| Protein Length | 982 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642622591 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | YP_001896639 |
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| Protein GI | 187924997 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0162015 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.0152175 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGACG TGCTCAACTC TCCCACTGGC GGCTGCGGTT CCGGCAACTG CGCGTGTAAA
TCGCAGGCGC AGCAACAGCG CGCGCCCCGC TCCTTCTTCG ACGACACCGA TTTCGGCACG
CCCGAGCGTC ACGCCGATAT CGACATCACG CTGGAAATCG ACGGCCAGTC CGTCACCGTT
CCCGCCGGCA CCTCAGTCAT GCGCGCCGCC GTCGAAGCGG GCGTCAACGT ACCGAAGCTC
TGCGCAACCG ATTCGCTGGA ACCGTTCGGC TCGTGCCGTT TGTGTCTGGT GGAAATCGAA
GGCAAGCGCG GTTATCCCGC TTCGTGCACG ACGCCGGTCG AAGCCGGCAT GAAAGTCCGC
ACGCAAACCG ATCGTCTGCA GTCGTTGCGC CGCAATGTGA TGGAGTTGTA TATCTCCGAT
CACCCGCTCG ACTGCCTCAC CTGCCCCGCC AACGGCGACT GTGAACTGCA GGACATGGCG
GGCGTAACGG GTTTGCGCGA AGTGCGCTAC GGCTTCGACG GCGCGAATCA CCTGAAGGAC
AAGAAAGACG AGTCGAATCC GTACTTCACC TACGACGCGT CCAAGTGCAT CGTCTGCAAT
CGCTGCGTGC GCGCGTGTGA GGAAACGCAA GGCACATTCG CGCTGACCAT CGCCGGACGT
GGTTTCGAAT CGCGCGTGGC GGCCAGCGAA AACGTGCCGT TCATGGAATC GGAATGCGTG
TCGTGCGGCG CGTGCGTGGC CGCGTGCCCG ACCGCTACCT TGCAGGAAAA GACCGTCATC
ATGCTCGGTC AGGCCGAGCA TTCGGTCGTC ACCACCTGCG CGTATTGCGG CGTCGGCTGC
TCGTTCAAGG CGGAGATGAA GGGCAACGAG GTCGTGCGGA TGGTGCCGCA CAAGAACGGC
CAGGCCAATG AAGGCCACGC CTGCGTGAAG GGCCGCTTTG CCTGGGGCTA CGCGACGCAC
AAGGACCGCA TCACCAAGCC GATGATTCGC GCGAAGATCA CCGATCCGTG GCGCGAAGTC
AGTTGGGAAG AAGCGCTCAC GTATGCGGCC TCGGAATTCC GCCGCATTCA GGCCAAGCAT
GGGCGCGATT CGATCGGCGG CATTACGTCG TCGCGTTGCA CGAACGAAGA AACGTACCTG
GTGCAAAAGC TCGTGCGCGC GGCGTTCGGC AACAACAACG TCGACACCTG CGCGCGCGTT
TGCCACTCGC CGACTGGCTA TGGACTGAAG ACCACGCTCG GCGAATCGGC GGGCACGCAG
ACTTTTGCGT CCGTGGATAA GGCCGACGTG ATTATGGTGA TCGGCGCGAA TCCGACCGAC
GGCCATCCGG TGTTCGGCTC GCGTCTGAAG CGGCGTGTGC GTGAAGGCGC GAAGCTGATC
GTCGTGGATC CGCGGCGCAT CGATATCGTC GATACGCCGC ACGTGAAGGC CTCGCATCAT
CTGCAATTGC GGCCGGGCAC CAACGTGGCC GTCGTGAATG CGCTGGCGCA CGTGATCGTC
ACCGAAGGCC TCGTCAATGA AGCGTTCGTC GCCGAGCGCT GCGAAACGCG CGCGTTCGAG
CAGTGGCGCG ATTTCGTCGC GCTGCCGGAG AACGCACCCG AGGCAACCGA GGCTGTGACC
GGCGTGCCGG CTCAATTCGT GCGCGAAGCC GCCCGCATCT ATGCGACCGG CGGCAACGCC
GCGATCTACT ACGGCCTCGG CGTCACCGAA CACGCGCAAG GTTCGACGAT GGTGATGGGC
ATCGCCAACC TCGCGATGGC GACGGGTAAC ATCGGTCGCG AAGGCGTGGG CGTGAATCCG
CTGCGCGGCC AGAACAACGT GCAGGGCTCG TGCGACATGG GCTCGTTCCC GCACGAACTG
CCGGGCTATC GCCACATCAG CGACACGGTC ACGCGCACGC TGTTCGAAGA CGCCTGGAAC
GTCACGCTGC AACCGGAACC GGGCCTGCGC ATTCCGAACA TGTTCGACGC CGCCGTGCAC
GGCACCTTCA AGGGGCTGTA CTGCCAGGGC GAAGACATCG TGCAGTCGGA TCCGAATACG
CATCACGTAT CGGCCGCGTT GTCGTCGATG GAATGCATCG TCGTGCAGGA TATTTTCCTG
AACGAGACTG CCAAGTATGC GCACGTGTTG CTGCCGGGTT CGTCGTTCCT CGAAAAGGAC
GGTACGTTCA CCAACGCGGA ACGCCGCATT TCGCGCGTAC GCAAGGTCAT GCCGCCGGTG
CCGGGTTACG CCGACTGGGA AGTCACGGTG ATGCTCTCGC GCGCGCTCGG CTATGAAATG
GACTACACGC ACCCGTCGCA GATCATGGAC GAGATCGCGC GTCTCACGCC CACTTTCCAC
GGCGTCTCGT ACAAAAAGCT CGACGAGATG GGCAGCATTC AGTGGCCTTG CAACGAAGAT
GCACCGGACG GCACGCCGAC CATGCACATC GACAGTTTCG TGCGCGGCAA GGGCAAGTTC
GTGATCACCA AGTTCATCGC GACGCCCGAG AAAGTTACGC GCAAATTTCC GATGCTGCTC
ACTACGGGCC GTATCCTGTC GCAGTACAAC GTGGGCGCGC AAACCCGCCG CACCGAGAAC
TCGCGCTGGC ACGACGAGGA CCGGCTGGAA ATCCATCCGC ATGACGCCGA AGAGCGCGGC
ATCAAGACCG ACGACTGGGT CGGCATCGAA TCGCGCGCGG GACAAACCGT GTTGCGCGCG
AAGGTGACGG AGCGCATGCA ACCGGGCGTC GTTTATACGA CATTCCACTT TCCTGAGTCG
GGCGCGAACG TGATCACCAC CGATAGCTCG GACTGGGCGA CCAACTGTCC GGAGTACAAG
GTGACCGCGG TGCAGGTAAT GCCGGTCGAA CAGCCGTCGC AATGGCAGAA AGAGTATTCG
CGTTTCAACA CCGAACAGCT CGATCTGCTG AAGCAACGCG AGTTGGCCAA CGCGACATCG
GGCAAGTGA
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| Protein sequence | MSDVLNSPTG GCGSGNCACK SQAQQQRAPR SFFDDTDFGT PERHADIDIT LEIDGQSVTV
PAGTSVMRAA VEAGVNVPKL CATDSLEPFG SCRLCLVEIE GKRGYPASCT TPVEAGMKVR
TQTDRLQSLR RNVMELYISD HPLDCLTCPA NGDCELQDMA GVTGLREVRY GFDGANHLKD
KKDESNPYFT YDASKCIVCN RCVRACEETQ GTFALTIAGR GFESRVAASE NVPFMESECV
SCGACVAACP TATLQEKTVI MLGQAEHSVV TTCAYCGVGC SFKAEMKGNE VVRMVPHKNG
QANEGHACVK GRFAWGYATH KDRITKPMIR AKITDPWREV SWEEALTYAA SEFRRIQAKH
GRDSIGGITS SRCTNEETYL VQKLVRAAFG NNNVDTCARV CHSPTGYGLK TTLGESAGTQ
TFASVDKADV IMVIGANPTD GHPVFGSRLK RRVREGAKLI VVDPRRIDIV DTPHVKASHH
LQLRPGTNVA VVNALAHVIV TEGLVNEAFV AERCETRAFE QWRDFVALPE NAPEATEAVT
GVPAQFVREA ARIYATGGNA AIYYGLGVTE HAQGSTMVMG IANLAMATGN IGREGVGVNP
LRGQNNVQGS CDMGSFPHEL PGYRHISDTV TRTLFEDAWN VTLQPEPGLR IPNMFDAAVH
GTFKGLYCQG EDIVQSDPNT HHVSAALSSM ECIVVQDIFL NETAKYAHVL LPGSSFLEKD
GTFTNAERRI SRVRKVMPPV PGYADWEVTV MLSRALGYEM DYTHPSQIMD EIARLTPTFH
GVSYKKLDEM GSIQWPCNED APDGTPTMHI DSFVRGKGKF VITKFIATPE KVTRKFPMLL
TTGRILSQYN VGAQTRRTEN SRWHDEDRLE IHPHDAEERG IKTDDWVGIE SRAGQTVLRA
KVTERMQPGV VYTTFHFPES GANVITTDSS DWATNCPEYK VTAVQVMPVE QPSQWQKEYS
RFNTEQLDLL KQRELANATS GK
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