| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_3001 |
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| Symbol | rpsA |
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| ID | 6282799 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 3384766 |
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| End bp | 3386499 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642622571 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_001896619 |
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| Protein GI | 187924977 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.213018 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.00787891 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAAATTT TGATTTTTAT GTCCGACCTG CAAACCTCTA CCCCGAATAC CGAATCTTTT
GCGGCTCTGT TCGAAGAGTC GCTGACCAAG CAAGACATGC GCGCCGGCGA AGTGATCTCC
GCCGAAGTCG TGCGTGTTGA CCACAACTTC GTGGTCGTCA ACGCTGGTCT CAAGTCCGAA
GCCTACATCC CGCTCGAAGA GTTCCTGAAC GACGCGGGCG AGGTAGAAGT GCAGGCGGGC
GACTTCGTTT CCGTCGCGAT CGACGCGCTG GAAAACGGCT ATGGCGACAC GATCCTGTCG
CGCGACAAGG CGAAGCGTCT CGCTTCGTGG CTGTCGCTGG AAAAGGCTCT CGACAACAAC
GAACTCGTGA CGGGCACGAT CACGGGCAAG GTCAAGGGCG GCATGACCGT CATGGTCAAC
GGCATCCGCG CGTTCCTGCC GGGTTCGCTG GTTGATACGC GTCCGGTCAA GGACACGACC
CCGTACGAAG GCAAGACGCT GGAATTCCGT GTCATCAAGC TCGACCGCAA GCGTAACAAC
GTCGTGCTGT CGCGCCGTGC CGTGATCGAA GCGACCCAAG GCGAAGAGCG CGCAAAGCTG
CTCGAAACGC TGAAGGAAGG CGCGATCGTG GAAGGCGTGG TGAAGAACAT CACGGATTAC
GGCGCGTTCG TGGACCTCGG CGGTATCGAC GGCCTGCTGC ACATCACCGA CATCGCATGG
CGTCGTGTGC GTCACCCGAG CGAAGTGCTG TCGGTTGGCC AGGAAGTCAC CGCGAAGATC
CTCAAGTTCG ATCAAGAGAA GAACCGCGTT TCGCTGGGCA TCAAGCAACT GGGCGACGAT
CCGTGGGAAG GCATTTCGCG CCGTTACCCG TCGGGCACGC GCCTGTTCGG TAAGGTCACC
AACATCACCG ACTACGGCGC ATTCGTCGAA GTCGAATCGG GCATCGAAGG CCTGGTTCAC
GTGTCGGAAA TGGACTGGAC GAACAAGAAC GTTGCACCGT CGAAGGTTGT GCAACTGGGC
GACGAAGTCG AAGTCATGGT TCTGGAAATC GACGAAGACC GCCGCCGTAT CAGCCTCGGC
ATGAAGCAAT GCAAGCCGAA CCCGTGGGAC GACTTCAGCC GCAACTTCAA GAAGGGCGAC
AAGCTGCAAG GCGCAATCAA GTCGATCACC GACTTCGGCG TCTTCATCGG TCTGCCGGGC
GGCATCGACG GTCTGGTTCA CCTTTCGGAC CTGTCGTGGT CGGAAACGGG CGAAGAAGCC
GTTCGCAAGT ACAAGAAGGG CGACGAAGTG GAAGCGATCG TTCTCGGCAT CGACGTCGAG
AAGGAACGCA TTTCGCTGGG CATCAAGCAG CTCGAAGGCG ACCCGTTCAG CAACTTCGTT
GCAATGAACG ACAAGGGTTC GATCGTCGAC GGCGTGGTCA AGACGGTGGA CGCGAAGGGT
GCTGTGGTTC AGCTGTCGGC GGAAGTCGAA GGCTACCTGC GCGCTTCGGA AATCGCACAA
GATCGCGTGG AAGATGCTCG CAACGTGCTG AAGGACGGCG ACAAGGTCAA CGCGATGATC
ATCAACATCG ATCGCAAGTC GCGTGGCATC AACCTGTCGA TCAAGGCCAA GGATTCGGCT
GAGCAACAGG AAGCGATCCG CGGCCTGGCT TCGTCGGACT CGAGCTCGGC TGCCACCGGC
ACGACGAACC TCGGCGCGCT GTTGAAGGCC AAGCTCGACG GCCAGAACCA GTAA
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| Protein sequence | MQILIFMSDL QTSTPNTESF AALFEESLTK QDMRAGEVIS AEVVRVDHNF VVVNAGLKSE
AYIPLEEFLN DAGEVEVQAG DFVSVAIDAL ENGYGDTILS RDKAKRLASW LSLEKALDNN
ELVTGTITGK VKGGMTVMVN GIRAFLPGSL VDTRPVKDTT PYEGKTLEFR VIKLDRKRNN
VVLSRRAVIE ATQGEERAKL LETLKEGAIV EGVVKNITDY GAFVDLGGID GLLHITDIAW
RRVRHPSEVL SVGQEVTAKI LKFDQEKNRV SLGIKQLGDD PWEGISRRYP SGTRLFGKVT
NITDYGAFVE VESGIEGLVH VSEMDWTNKN VAPSKVVQLG DEVEVMVLEI DEDRRRISLG
MKQCKPNPWD DFSRNFKKGD KLQGAIKSIT DFGVFIGLPG GIDGLVHLSD LSWSETGEEA
VRKYKKGDEV EAIVLGIDVE KERISLGIKQ LEGDPFSNFV AMNDKGSIVD GVVKTVDAKG
AVVQLSAEVE GYLRASEIAQ DRVEDARNVL KDGDKVNAMI INIDRKSRGI NLSIKAKDSA
EQQEAIRGLA SSDSSSAATG TTNLGALLKA KLDGQNQ
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