Gene Bphyt_2920 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_2920 
Symbol 
ID6281683 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp3298860 
End bp3299519 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content63% 
IMG OID642622488 
ProductHAD-superfamily hydrolase, subfamily IA, variant 1 
Protein accessionYP_001896538 
Protein GI187924896 
COG category[R] General function prediction only 
COG ID[COG0546] Predicted phosphatases 
TIGRFAM ID[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00300829 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTAGAG AGCAATTTGA TCTGATCGTC TTCGACTGGG ACGGGACGTT GATGGATTCG 
ACCGCGCACA TCACGCGCAG CATCCAGTCG GCGTGCCGCG ATCTTGGGTT GCCGGTGCCC
GCCGACGAGG CGGCCAGCTA TGTCATCGGC CTTGGTCTGC GCGACGCGCT GCAGATTGCC
GCGCCCACGC TCGATCCTTC GGACTATCCG CGGCTGGCCG AGCGCTACCG CTTCCATTAT
CTGGTGAAGG ATCAGACCAC CGAGCTGTTC GTCGGTGTGC GCGAGATGTT GCAGGAATTG
CGCGATCAGG GCTATTTGCT GGCCGTGGCG ACGGGCAAGA GCCGCGTCGG GCTGAATCGC
GCGTTGGATC AGTCGCGCTT GACAAGCCTG TTCGACGGCA CGCGCTGTGC CGACGAAACG
TTCTCGAAGC CGCACCCCGC GATGCTGCAC GAATTGACGC GCGAACTGGG GCAGGATAAC
GCGCGTACGG TGATGGTCGG CGATACGACG CACGATCTGC AAATGGCGAT CAACGCGGGC
GTCGCGGGAA TTGGCGTCAC ATATGGCGCG CATCCTGCGG AATCGTTGAG CGCGTTGTCG
CCTAGGTTCG TTGCGTCGAG CGTCAGCGTG CTGTCCGGCT GGCTGCGGGA GAACGCATGA
 
Protein sequence
MAREQFDLIV FDWDGTLMDS TAHITRSIQS ACRDLGLPVP ADEAASYVIG LGLRDALQIA 
APTLDPSDYP RLAERYRFHY LVKDQTTELF VGVREMLQEL RDQGYLLAVA TGKSRVGLNR
ALDQSRLTSL FDGTRCADET FSKPHPAMLH ELTRELGQDN ARTVMVGDTT HDLQMAINAG
VAGIGVTYGA HPAESLSALS PRFVASSVSV LSGWLRENA