| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2870 |
|---|
| Symbol | |
|---|
| ID | 6283875 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 3246270 |
|---|
| End bp | 3247964 |
|---|
| Gene Length | 1695 bp |
|---|
| Protein Length | 564 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642622434 |
|---|
| Product | Lytic transglycosylase catalytic |
|---|
| Protein accession | YP_001896488 |
|---|
| Protein GI | 187924846 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000269929 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGATTTA TCTTTAGTGC GTTGCTGGTC CTGACGCTCG CCGCCTGCGC GAGCCAGGGA
CCGACGACGA GCATTCCGAA CACCGCAACC AACCCCGCCA GTCAGCAAGC CGTAGCAGAC
GCCCTTCGCA AGTCAGCCAC CGCCAAAGAG ACGATCAACG TCGATCAAGG CTCCGTCACT
CAGTTGACGA GCGCCGACGC TGACCTTTGG GGCCGTATTC GCCGTGGTTT CCAGATGCCG
GACCTGCAAA CCGACCTCGT CGACATGCAG GTCAACTGGT ATGCGCAACG GCCTGACTAC
GTGCAGCGCA TGACCGAGCG CTCGCAGAAA TACCTTTATC ACATCGTCGA AGAGCTCGAG
GCGCGCCATA TGCCGACCGA GCTCGCGTTG CTGCCGTTCA TCGAATCGGC GTATAGCCCG
CAGGCTTTGT CTGTCGCGAA GGCGGCCGGC ATGTGGCAGT TCATGCCGGG CACGGGCCGC
ACCTACAACC TCAAGCAGAA CATGTGGCAG GACGAGCGGC GCGATGTGCT GGCGTCGACC
AGTGCCGCGC TCGACTATCT GTCGCGTCTG CATGACATGT TCGGCGACTG GCAGTTGGCG
CTCGCGGCCT ATAACTGGGG TGAGGGCAAC GTGCAGCGCG CGATTGCGCG CAATGAAGCG
GCGGGCCTGC CGACCGACTA CCTCAGCCTG CGCATGCCGA ACGAGACGCG TAACTACGTG
CCGAAGCTGC AGGCGGTCAA GAACATCGTG ATGAACCCGC AAATGTACGG GCTCACGCTG
CCGACCATTC CGAACCACCC GTATTTCGTG ACGGTAACCA CCTCGCACGA CATCGACGTG
GATATGGCCG CCAAGCTCTC GAACCTGTCC GCGGACGAAT TCCGCGCGTT GAACCCGTCG
TTCAGGAAGC CGGTGATTCT CGGCGCCACG CAGCCTCAGA TCCTGCTGCC GTTCGATAAC
GCGAGCGCCT TCGAGCGCAA TCTGAAGACT TACTCCGGCT CGCTGTCGTC GTGGACCACG
TACACGGTCA CCGAACGCGC GACACCCGCG GCAATCGCGC AGAAGATCAG CGTCGACGCC
GACACGCTGA TGGAAGTGAA CAAGATTCCG GTCGGCATGC GTTTGAAACC CGGCTCCACG
ATCGTGGTGC CGCGCGGTTC GGACGACGAC GAGGACATCA GCGCCGACGT CGCCGAAAGC
GCCGTGCTCG CCATGGAACC CGACGTCCCC GATACGCGCA AGATGCTGAT TCGCGTGCGC
CGCAATCAGT CGATGGCGGC CATTGCCGTG CGCTACGGCG TATCGGTCGG CCAGTTGAAG
GCCTGGAACC GCACGCATCG CGACGCCGTT TCGCGCGGTC AGGTGATCGT GCTGCACGTG
CCGGTCGGCA AAGCCATGCC GAGCGAGCCG GGTCCGGAAC GCATCGCGAC CGACGTGCAA
GGCGGCGGCG TCGAGAAGAT CGGCACCCGC GTCGCAGACA CCAGACGCGA ATCGCGCTAC
GATAAGAAGA AGGGTCGTGG CCGGGCAGAG GTGGTGAAGG TTTCCGAGCC GGTAGGCAAA
GTCGTCAAGC CGACGGCATC CAGCGCCAGC AAGGGCAAGG TGACCAAGGT TTCGGCTTCC
ACGTCCAGCA AGGCGTCGAA GGCTGCGGCA GAGAGCCGCC CGAAGACCGC GGCCAGCGCG
AAGAAGGGTA AATAG
|
|---|
| Protein sequence | MRFIFSALLV LTLAACASQG PTTSIPNTAT NPASQQAVAD ALRKSATAKE TINVDQGSVT
QLTSADADLW GRIRRGFQMP DLQTDLVDMQ VNWYAQRPDY VQRMTERSQK YLYHIVEELE
ARHMPTELAL LPFIESAYSP QALSVAKAAG MWQFMPGTGR TYNLKQNMWQ DERRDVLAST
SAALDYLSRL HDMFGDWQLA LAAYNWGEGN VQRAIARNEA AGLPTDYLSL RMPNETRNYV
PKLQAVKNIV MNPQMYGLTL PTIPNHPYFV TVTTSHDIDV DMAAKLSNLS ADEFRALNPS
FRKPVILGAT QPQILLPFDN ASAFERNLKT YSGSLSSWTT YTVTERATPA AIAQKISVDA
DTLMEVNKIP VGMRLKPGST IVVPRGSDDD EDISADVAES AVLAMEPDVP DTRKMLIRVR
RNQSMAAIAV RYGVSVGQLK AWNRTHRDAV SRGQVIVLHV PVGKAMPSEP GPERIATDVQ
GGGVEKIGTR VADTRRESRY DKKKGRGRAE VVKVSEPVGK VVKPTASSAS KGKVTKVSAS
TSSKASKAAA ESRPKTAASA KKGK
|
|---|
| |