| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2867 |
|---|
| Symbol | carB |
|---|
| ID | 6283872 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 3239695 |
|---|
| End bp | 3242949 |
|---|
| Gene Length | 3255 bp |
|---|
| Protein Length | 1084 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642622431 |
|---|
| Product | carbamoyl phosphate synthase large subunit |
|---|
| Protein accession | YP_001896485 |
|---|
| Protein GI | 187924843 |
|---|
| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
|---|
| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00982729 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAAGC GGACAGACAT CAAGAGCATC CTCATCATCG GCGCGGGTCC GATCATCATC
GGCCAGGCGT GCGAGTTCGA TTACTCGGGC GCGCAGGCAT GCAAGGCGCT GCGTGAGGAA
GGCTACAAGG TCATTCTCGT CAACAGCAAT CCGGCGACGA TCATGACCGA CCCGAACACG
GCCGACGTGA CCTACATCGA GCCGATCACG TGGGAAGTGG TGGAGCGCAT CATCGCCAAG
GAGCGCCCCG ACGCGATCCT GCCGACGATG GGCGGCCAGA CCGCGCTGAA TTGCGCGCTC
GATCTGCACG CGCACGGCGT GCTGGAGAAG TACAAGGTCG AGCTGATCGG CGCATCGCCG
GAAGCGATCG ACAAGGCGGA AGACCGCCAG AAGTTCAAAG ATGCGATGAC CAAGATCGGC
CTCGGTTCGG CCAAATCGGG CACCGCGCAT TCCATGGAAG AAGCGCTGGC GGTGCAAGCG
GACATCGCTT CGCAAACGGG CAGCGGCGGC TATCCGGTCG TGATTCGTCC GTCGTTCACG
TTGGGCGGTT CGGGCGGCGG CATCGCGTAT AACCGCGACG AGTTCGAAGA GATCTGCAAG
CGCGGTCTCG ATTTGTCGCC CACGCGCGAG TTGCTGATCG AAGAGTCGCT GCTCGGCTGG
AAAGAGTACG AGATGGAAGT GGTCCGCGAC AAAAAGGACA ACTGCATCAT CGTCTGCTCG
ATCGAAAACC TGGACCCGAT GGGCATCCAC ACGGGCGACT CGATCACCGT CGCGCCGGCG
CAAACGCTCA CGGACAAGGA ATATCAGATC CTGCGTAACG CATCGCTCGC GGTGTTGCGC
GAGATCGGTG TCGACACCGG CGGTTCGAAC GTGCAGTTCT CGATCAATCC GAAAGACGGC
CGGATGGTCG TGATCGAAAT GAATCCGCGT GTGTCGCGCT CGTCGGCGCT GGCGTCGAAG
GCGACCGGTT TCCCGATCGC GAAAATCGCG GCGAAGCTGG CGGTCGGCTA CTCGCTCGAC
GAACTGAAGA ACGAAATTAC CGGCGGCCAG ACTCCGGCGT CGTTCGAACC GACCATCGAT
TACGTCGTTA CCAAGATCCC GCGTTTCGCG TTCGAAAAAT TCCGCGAAGC CGATTCGCGC
CTGACCACGC AGATGAAGTC GGTCGGCGAA GTGATGGCGA TTGGCCGCAC CTTCCAGGAA
TCGTTCCAGA AGGCGCTGCG CGGTCTGGAA GTCGGCGTGG ACGGTCTGGA CGAAAAGACC
GATAACCGCG ACGAGATCAT CCGCGAGATC GGCGAAGCCG GTCCGGATCG CATCTGGTAC
GTGGGCGACG CGTTCCGCGT CGGCATGACG GCCGAAGAGA TTTTCGAAGA AACCTCGATC
GACCCGTGGT TCCTCGCGCA GATCGAACAG ATCATCCTGA AGGAAAAGGC GCTGGCCGGC
CGTACGCTCG CCAGCCTCTC GAAGGAAGAG CTGAAGTATC TGAAGCAAAG CGGCTTCTCG
GATCGCCGTC TCGCCAAGTT GCTCGGCGCA AAGCCGGCGG AAGTGCGTCA ACGCCGTATC
GAGTTGAACG TGCGCCCGGT GTACAAGCGC GTGGATACGT GCGCGGCCGA GTTCGCCACG
AAAACCGCCT ACATGTACTC GACCTACGAG GAAGAGTGCG AGGCAAACCC GACCAGCAAC
AAGAAGATCA TGGTGCTGGG CGGCGGCCCG AACCGGATCG GTCAGGGCAT CGAGTTCGAC
TACTGCTGCG TGCACGCCGC GCTCGCCATG CGCGAAGACG GCTACGAAAC GATCATGGTC
AACTGCAACC CTGAAACCGT TTCGACCGAC TACGACACGT CCGACCGTCT GTACTTCGAA
TCGCTGACGC TCGAAGACGT GCTCGAAATC GTCGACAAGG AAAAGCCGGT CGGCGTGATC
GTGCAATACG GCGGTCAAAC GCCGCTGAAG CTAGCACTGG ATCTCGAAGC GAACGGTGTG
CCGATCGTCG GCACGTCGCC CGACATGATC GACGCCGCGG AAGACCGCGA GCGTTTCCAG
AAGCTGCTGC AGGACCTCGG CCTGCGTCAG CCGCCGAACC GTACCGCGCG CGCCGAAGAC
GAAGCGCTCA AGCTCGCCGA CGAAATCGGT TATCCGCTGG TGGTGCGCCC GTCGTACGTG
CTGGGCGGCC GCGCGATGGA AATCGTGCAC GAGCCGCGCG ACCTCGAACG CTATATGCGC
GAGGCCGTGA AGGTGTCGAA CGACTCGCCG GTACTGCTCG ACCGCTTTTT GAACGACGCG
ATCGAATGCG ACGTGGATTG CATCTCCGAC GGTGAAGCGG TGTTTATCGG CGGCGTGATG
GAGCACATCG AACAGGCGGG CGTGCACTCG GGCGACTCGG CGTGCTCGCT GCCGCCGTAT
TCGCTGTCGA AGGAAACCGT TGCTGAGTTG AAGCGCCAGA CTGGCGCAAT GGCGAAGGCG
CTGAACGTGA TCGGCCTGAT GAACGTGCAG TTCGCGATTC AGCAGGTGCC GCAGGCAGAC
GGCTCGAAAG AAGACGTTAT CTACGTGCTC GAAGTGAACC CGCGCGCCTC GCGCACGGTG
CCGTACGTGT CGAAGGCAAC CAGCCTGCCG CTCGCGAAGA TCGCGGCGCG CGCCATGGTC
GGCCAGAAGC TCGCCGATCA AGGCGTGACG AAGGAAATCG ATCCGCCGTA CTTCAGCGTG
AAGGAAGCCG TGTTCCCGTT CGTCAAGTTC CCGGCAGTCG ATCCGGTGCT CGGACCGGAA
ATGCGTTCGA CCGGCGAAGT GATGGGCGTG GGCCAGACGT TCGGCGAAGC GCTGTTCAAG
TCGCAACTCG CGGCGGGTTC GCGTCTGCCG GAGTCGGGCA CGGTGCTGCT GACCGTGATG
GACGCCGACA AGCCGAAGGC CGTCGAAGTC GCGCGCATGC TGCACGAACT CGGTTATCCG
ATCGTCGCGA CCAAGGGCAC GGCCGCCGCG ATCGAAGCGG CCGGCGTGCC GGTGAAGGTC
GTCAACAAGG TAAAGGACGG CCGTCCGCAC ATCGTCGACA TGATCAAGAA CGGTGAGATC
GCGCTGGTCT TCACGACCGT CGACGAAACC CGCGCCGCGA TCGCCGACTC GCGTTCGATC
CGCATGAGCG CGCAGGCGAA CAAGGTCACG TACTACACGA CCATGTCCGG TGCGCGTGCC
GCTGTGGAAG GTTTGCGCTA TTTGAAGGAC CTGGAAGTCT ATGATTTACA AGGCCTCCAC
GCTCGCCTAA ACTAA
|
|---|
| Protein sequence | MPKRTDIKSI LIIGAGPIII GQACEFDYSG AQACKALREE GYKVILVNSN PATIMTDPNT
ADVTYIEPIT WEVVERIIAK ERPDAILPTM GGQTALNCAL DLHAHGVLEK YKVELIGASP
EAIDKAEDRQ KFKDAMTKIG LGSAKSGTAH SMEEALAVQA DIASQTGSGG YPVVIRPSFT
LGGSGGGIAY NRDEFEEICK RGLDLSPTRE LLIEESLLGW KEYEMEVVRD KKDNCIIVCS
IENLDPMGIH TGDSITVAPA QTLTDKEYQI LRNASLAVLR EIGVDTGGSN VQFSINPKDG
RMVVIEMNPR VSRSSALASK ATGFPIAKIA AKLAVGYSLD ELKNEITGGQ TPASFEPTID
YVVTKIPRFA FEKFREADSR LTTQMKSVGE VMAIGRTFQE SFQKALRGLE VGVDGLDEKT
DNRDEIIREI GEAGPDRIWY VGDAFRVGMT AEEIFEETSI DPWFLAQIEQ IILKEKALAG
RTLASLSKEE LKYLKQSGFS DRRLAKLLGA KPAEVRQRRI ELNVRPVYKR VDTCAAEFAT
KTAYMYSTYE EECEANPTSN KKIMVLGGGP NRIGQGIEFD YCCVHAALAM REDGYETIMV
NCNPETVSTD YDTSDRLYFE SLTLEDVLEI VDKEKPVGVI VQYGGQTPLK LALDLEANGV
PIVGTSPDMI DAAEDRERFQ KLLQDLGLRQ PPNRTARAED EALKLADEIG YPLVVRPSYV
LGGRAMEIVH EPRDLERYMR EAVKVSNDSP VLLDRFLNDA IECDVDCISD GEAVFIGGVM
EHIEQAGVHS GDSACSLPPY SLSKETVAEL KRQTGAMAKA LNVIGLMNVQ FAIQQVPQAD
GSKEDVIYVL EVNPRASRTV PYVSKATSLP LAKIAARAMV GQKLADQGVT KEIDPPYFSV
KEAVFPFVKF PAVDPVLGPE MRSTGEVMGV GQTFGEALFK SQLAAGSRLP ESGTVLLTVM
DADKPKAVEV ARMLHELGYP IVATKGTAAA IEAAGVPVKV VNKVKDGRPH IVDMIKNGEI
ALVFTTVDET RAAIADSRSI RMSAQANKVT YYTTMSGARA AVEGLRYLKD LEVYDLQGLH
ARLN
|
|---|
| |