| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2708 |
|---|
| Symbol | |
|---|
| ID | 6283780 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 3060806 |
|---|
| End bp | 3062917 |
|---|
| Gene Length | 2112 bp |
|---|
| Protein Length | 703 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642622269 |
|---|
| Product | phospholipase C, phosphocholine-specific |
|---|
| Protein accession | YP_001896327 |
|---|
| Protein GI | 187924685 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3511] Phospholipase C |
|---|
| TIGRFAM ID | [TIGR03396] phospholipase C, phosphocholine-specific, Pseudomonas-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCAA AAAATCGCCG TGATTTTCTG CGCTCCGCCG CGCATGCAGC GGGTTCCGCC
ACCGCGTTGA GCATGCTGCC GCTGGGCATT CGCAACGCAC TCGCCATTCC CGCCAACAAC
AAGACCGGCA CCATTCGCGA TGTCGAGCAC ATTGTCGTGC TGATGCAGGA AAACCGTTCG
TTCGACCACT ACTTCGGCAC GCTCAAGGGC GTGCGCGGTT TTGGCGACAC GCGCGCGATC
AATCTGCCGA ACGGCAAGCC CGTGTGGTAT CAACCGCTCG CGGCGGATGC CGGTTACGTG
CTGCCGTTCC GCCCGAGCGC GCCGAATCTG GGTCTGCAAT TCCTGCAGGA TCTCGCGCAC
GACTGGACCA GCACGCACGC GGCTTGGAAC GGCGGCCGCT ACGATCAATG GGTGCCCGCC
AAGAGCGCCA CGACAATGGC CTATTTCACG CGCGAGGACA TTCCGTTTCA CTACCAACTC
GCCGATGCGT TCACCATCTG CGACGCGTAC CACTGCTCGC TGATGGGACC GACGGACCCG
AACCGCTATT ACATGTGGAG CGGCTGGGTC GGCAACGACG GCAGCGGCGG CGGCCCAGTG
ATCGACAACT CCGAACTCGG CTACGGGTGG TCCACTTACC CCGAAGTGCT GCAGAACGCG
GGCATTTCGT GGAAGATCTA CCAGGACATC GGCACCGGTC TCGACGCCAA CGGTTCGTGG
GGCTGGACGC AAAACCCGTA CATCGGCAAC TACGGCGACA ACTCGCTGCT CTACTTCAAC
CAGTACCGCA ACGCGCAGCC CGGCAATCCG CTTTACGACA ACGCGCGCAC CGGCACGAAC
GCGGCGAAAG GCGACGGCTA CTTTGACATC CTTAAACGCG ACGTGCAGAA CAACGCGTTG
CCGCAAGTGT CGTGGATCGT CGCGCCCGAA GCCTACTCCG AACATCCGAA CTGGCCGACC
AACTACGGCG CGTGGTACAT CGACCAGGTC CTGCAGATTC TCACGTCGAA TCCCGAGGTG
TGGAGCAAGA CGGTGCTGCT GATCAACTAC GACGAGAACG ACGGTTTCTT CGATCACATG
GTGCCGCCGT TCGCACCGTC GTCGAGCGCG AACGGTCTGT CCACCGTCGA CACAAGCAAC
GAAATCTATC CGGGCGATGC GAAGATTCCC GCCGCCCCGT ACGGACTCGG ACCGCGCGTG
CCGATGCTGG TCGTGTCGCC GTGGTCGAAA GGCGGCTATG TGTGCTCGGA ACTGTTCGAC
CACACGTCGG TGATCCGCTT CATCGAAAAG CGTTTCGGAC ACGAGCACAA CCTCGGCGAA
TCGAACATCA CGCCGTGGCG CCGCGCGGTG TGCGGCGATC TGATGTCGGC GTTCAACTTC
CGCAATCCGA ACGACGCTTT CCCGACGCTG CCGGGCACGA GCGGCTACGT GCCGCCGGAT
CAGAACCGCC ATCCGGATTA CGTGCCGCTG CCGCCCGCCT TGCAGGCCGT GCCAAAGCAG
GAACCCGGCG TGCGCCCCGC TCGCGCGTTG CCCTACGAGT TGTTCGTGCG TGTGCATGGC
GAAGGTTCGG CCAACCAGCT TACGATGCGC TTCGTCAACA CGGGCCGCAC TGGCGCAGTG
TTTCTCGTCT ATGCCGCGCA TAGTCTCGAC GCGCCGCGCA CCTACACGGT CGAAGCCGGC
AAGCGCCTGC AGGACGCGTT GCCGCTGAAT GCCGACGGCA GCTACGACTT CACTGTGTAC
GGCCCGAATG GCTTTCTGCG CCGCTTCGCG GGCAAGCCGG TCGCGCGCAA CTGGTGGAAC
GGTTCCGACA TCGCGCGGCC TGAAGTCGAG GAAGGCTACG ACGTCGCGAA CGGCAATCTG
CAGTTGCGCC TTGAAAACGT GGGCAGCGCG CCTTCCCAAT TCAAGATCGT CAACGCGTAC
GACCCGAACA ACGTGATCCG GCATACGGTG CGCGGCGGCG ACACTGACCA GATCTACCTC
GATCTGCGCA ATGCTCACGG CTGGTACGAC CTGGCGATTA CGGTCAATAC GGATCCGCTG
TTCGCGCGGC GTTTTGCCGG ACACGTGGAG ACCGGCAAGA GCAGCATGAG CGATCCGGCG
CTGGGGAGCT AA
|
|---|
| Protein sequence | MTSKNRRDFL RSAAHAAGSA TALSMLPLGI RNALAIPANN KTGTIRDVEH IVVLMQENRS
FDHYFGTLKG VRGFGDTRAI NLPNGKPVWY QPLAADAGYV LPFRPSAPNL GLQFLQDLAH
DWTSTHAAWN GGRYDQWVPA KSATTMAYFT REDIPFHYQL ADAFTICDAY HCSLMGPTDP
NRYYMWSGWV GNDGSGGGPV IDNSELGYGW STYPEVLQNA GISWKIYQDI GTGLDANGSW
GWTQNPYIGN YGDNSLLYFN QYRNAQPGNP LYDNARTGTN AAKGDGYFDI LKRDVQNNAL
PQVSWIVAPE AYSEHPNWPT NYGAWYIDQV LQILTSNPEV WSKTVLLINY DENDGFFDHM
VPPFAPSSSA NGLSTVDTSN EIYPGDAKIP AAPYGLGPRV PMLVVSPWSK GGYVCSELFD
HTSVIRFIEK RFGHEHNLGE SNITPWRRAV CGDLMSAFNF RNPNDAFPTL PGTSGYVPPD
QNRHPDYVPL PPALQAVPKQ EPGVRPARAL PYELFVRVHG EGSANQLTMR FVNTGRTGAV
FLVYAAHSLD APRTYTVEAG KRLQDALPLN ADGSYDFTVY GPNGFLRRFA GKPVARNWWN
GSDIARPEVE EGYDVANGNL QLRLENVGSA PSQFKIVNAY DPNNVIRHTV RGGDTDQIYL
DLRNAHGWYD LAITVNTDPL FARRFAGHVE TGKSSMSDPA LGS
|
|---|
| |