| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2527 |
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| Symbol | |
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| ID | 6282864 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 2854005 |
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| End bp | 2856353 |
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| Gene Length | 2349 bp |
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| Protein Length | 782 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642622086 |
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| Product | RNA binding S1 domain protein |
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| Protein accession | YP_001896146 |
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| Protein GI | 187924504 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.197314 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000000921984 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGGAAA CCGTAGCACT CAAGATCGTA CAGCGCATCG CCGCCGAACT GTCCGTCCAG
CCGCGCCAGG TCGCGGCCGC GGTGCAACTT CTCGACGAAG GAGCGACTGT TCCGTTCATC
GCCCGCTACC GTAAGGAAGT GACCGACAAT CTCGACGACA CGCAACTGCG TAACCTCGAG
GAACGCCTGC TGTATCTGCG CGAGCTGGAA GACCGGCGCG CCGCGATCAT CGCGAGCATC
GACGAACAGG GCAAGCTCAC CGACGAGCTA CGCACCGCGA TCGAAGGCGC CGACAGCAAG
CAGGTGCTGG AAGACCTGTA TCTCCCGTAT AAGCCGAAGC GCCGCACGCG CGCGCAGATC
GCCCGTGAAG CCGGCCTGCA GCCGCTCGCC GACGCGTTGC TGGCCAATCC CCTGCTCGAC
CCGCAAACCG AAGCCGCCGC CTACGTGGAC GCCGAGAAAG GCGTCGCCGA CCTCAAGGCC
GCGCTCGACG GCGCGCGCGA CATTCTCTCG GAACAGTTCG GCGAAACCGC CGAATTGCTC
GGCAAGCTGC GCGACTACCT GTTCAACCAG GGCGTGGTGT CGTCGAAAGT GGTGGAAGGT
AAGGAAAACG CCGAAGAAGA GAAATTCCGC GACTACTACG ACTACTCGGA AACCATCCGC
ACCGTGCCGT CGCATCGCGC GCTGGCGCTG TTCCGCGGCC GCAATGCGGG CGTGCTGATG
GTCAAGCTGG GGCTGGGCGA AGAACTCGAC GCGCAGGTGC CGCATCCGGG CGAAGCGCTG
ATTGCGCGCC ATTTCGGCAT CGCCAATCAG AACCGTCCGG CCGACAAGTG GCTCTCCGAC
GTGTGCCGCT GGTGCTGGCG CGTGAAGGTA CAGCCGCATA TCGAAAACGA ACTGCTGACC
AATCTGCGCG ACGAAGCCGA GCATGAGGCG ATTCGCGTGT TCGCGCGCAA TCTGAAGGAC
TTGCTGCTGG CGGCGCCCGC CGGCCCGAAG GCCGTGATCG GCCTCGATCC GGGTATGCGC
ACCGGCGTGA AAGTCGCGGT GGTCGACCGG ACCGGCAAGG TGCTCGCCAC CGATGTGATC
TATCCGCACG AACCGCGCCG CGACTGGGAC GGCTCGATCG CGAAACTCGC GCGCATCTGC
GCGCAGACGC AGGCTGAATT GATCAGCATC GGCAACGGTA CGGCGTCGCG TGAAACGGAC
AAGCTCGCGA GCGAACTGAT TGCGCGCCAT CCGGAATTCA AGTTGCAGAA GATCGTCGTG
TCCGAAGCGG GCGCGTCGGT GTACTCGGCC TCCGAACTCG CGGCGAAGGA ATTCCCCGAC
ATGGACGTGT CGCTGCGCGG CGCTGTGTCG ATTGCGCGGC GTTTGCAAGA CCCGCTCGCC
GAGTTGGTGA AGATTGAGCC AAAGGCGATC GGTGTCGGCC AGTATCAGCA CGACGTGAAT
CAGCGCGAAT TGGCACGTTC GCTCGATGCG GTGGTCGAGG ACTGCGTGAA CGCGGTCGGC
GTGGATGCGA ATACGGCGTC GGTCGCTTTG CTTGCGCGCG TGTCGGGTCT GAATGCCACG
TTGGCGCGCA ATATCGTCGA CTATCGCGAT GCGAACGGTC CGTTCCCATC GCGCGAGCAT
TTGCGCAAAG TGCCGCGTCT GGGCGACAAG ACGTTCGAGC AGGCCGCCGG GTTCCTGCGC
ATCAATAACG GTGAGAATCC GCTCGACCGC TCGTCGGTTC ACCCGGAAGC GTATCCGGTC
GTCGAACGCA TGCTGGCGAA AATCAGCAAG CACGTCGGCG AAGTGCTGGG CAATCGCGAC
GCGTTGCGCG GCCTCTCGCC CGCGGAATTC GTCGACGATC GTTTCGGCCT GCCGACCGTG
CGTGACATTC TGCTCGAACT CGAAAAGCCG GGCCGCGATC CGCGCCCCGA GTTCAAGACC
GCGACGTTCC GTGAAGGCGT CGAAAAGGTC AGCGATCTGA CGCCAGGCAT GGTGCTCGAA
GGCGTCGTGA CGAACGTGGC GGCATTCGGC GCGTTTATCG ATATCGGCGT GCATCAGGAC
GGTCTCGTGC ACGTGTCGGC TATGTCGACC AAGTTCATCA AGGACCCGCA TGAAGTCGTC
AAGGCCGGTC AGATCGTCAA GGTGAAGGTG CTGGAAGTGG ACGTGAAACG CCAGCGTATC
GCTTTGACGA TGCGCATGGA CGACGAGGTC GGTGTGGCGG CGGCACGCAG CGGTGGCGGC
GCGCAGCAGG ATCGCGGCGG CTCGGGCCGT TCAGGCGGCG GTGGACGCGG CGCGCAGCAA
CAACGCTCGC GTGAGCCGGA AGCGGGCGGC GCGATGGCCG CTGCATTCGC CAAGCTCAAG
CAGAAGTAA
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| Protein sequence | MTETVALKIV QRIAAELSVQ PRQVAAAVQL LDEGATVPFI ARYRKEVTDN LDDTQLRNLE
ERLLYLRELE DRRAAIIASI DEQGKLTDEL RTAIEGADSK QVLEDLYLPY KPKRRTRAQI
AREAGLQPLA DALLANPLLD PQTEAAAYVD AEKGVADLKA ALDGARDILS EQFGETAELL
GKLRDYLFNQ GVVSSKVVEG KENAEEEKFR DYYDYSETIR TVPSHRALAL FRGRNAGVLM
VKLGLGEELD AQVPHPGEAL IARHFGIANQ NRPADKWLSD VCRWCWRVKV QPHIENELLT
NLRDEAEHEA IRVFARNLKD LLLAAPAGPK AVIGLDPGMR TGVKVAVVDR TGKVLATDVI
YPHEPRRDWD GSIAKLARIC AQTQAELISI GNGTASRETD KLASELIARH PEFKLQKIVV
SEAGASVYSA SELAAKEFPD MDVSLRGAVS IARRLQDPLA ELVKIEPKAI GVGQYQHDVN
QRELARSLDA VVEDCVNAVG VDANTASVAL LARVSGLNAT LARNIVDYRD ANGPFPSREH
LRKVPRLGDK TFEQAAGFLR INNGENPLDR SSVHPEAYPV VERMLAKISK HVGEVLGNRD
ALRGLSPAEF VDDRFGLPTV RDILLELEKP GRDPRPEFKT ATFREGVEKV SDLTPGMVLE
GVVTNVAAFG AFIDIGVHQD GLVHVSAMST KFIKDPHEVV KAGQIVKVKV LEVDVKRQRI
ALTMRMDDEV GVAAARSGGG AQQDRGGSGR SGGGGRGAQQ QRSREPEAGG AMAAAFAKLK
QK
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