| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2501 |
|---|
| Symbol | |
|---|
| ID | 6283352 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 2823341 |
|---|
| End bp | 2825182 |
|---|
| Gene Length | 1842 bp |
|---|
| Protein Length | 613 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642622060 |
|---|
| Product | extracellular solute-binding protein family 5 |
|---|
| Protein accession | YP_001896121 |
|---|
| Protein GI | 187924479 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0677964 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0181569 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGTGCG GCGTGCTGGC CGTGGCTGGT CTTCTCGTGG CGCCGCGGGC GCACGCGGTC
TATGCGATCG CGCAATACGG CGAGCCGAAG TATCTGGCGG ATTTCAAGCA CTTCGATTAC
GTCAATCCGA ATGCGCCCAA GGGCGGCACG CTGGTGCTAG CCAATCCGAG CCGCCTCACC
AGCTTCGACA AATTCAATCC GTTCACGCTG CGCGGCAATA CGGCGCCCGG TGTCGACCTG
ATGTTCGAAA GCCTCACCGT CGGCAGCAGC GACGAAGTGG CGTCCGCCTA CGGGCTGCTC
GCCGACGACA TCAGCATCGC GCCGGACGGC CTCTCGGTGA CGTTCCACAT CAATCCGCTC
GCACGCTTTT CGAACGGCGA TCCGGTCACC GCCGACGACG TCAAGTTCTC GCTCGACACG
CTGAAAAGCC CGCAGGCCGC GCCGCAATTC GCATCGATCT TCGGCGAAAT CACGCGCGCG
GTGGTGGTCG ATCCGCATAC GATCCGCTTC GAGTTTCACC AGCGCAATCG CGAGTTGCCT
CTTCTCGCGG GCGGCATACC GGTGTTCTCG CGCAAGTGGG GGATGAAGCC GGACGGCAGC
CGCATTGCAT TCGACCAGCT CGCGTTCGAA AAGCCGATCG GCAGCGGGCC TTATCTGATC
GAGCAGTACG ATAACGGCCG CACCATCACC TATCGGCGCG ACCCGAATTA CTGGGGCGCG
GCGCTGCCGG TGCGCGTCGG CATGAATAAC TTCGATCGCA TCGTCTACAA GCTGTATTCG
GATAACACGG CGCGGCTGGA GGCGTTCAAG GCAGGCGAGT ACGACGCACT GGTCGAGTAC
GTCGCGCGCA ATTGGGTGCG GCGTGACGTC GGCAAGAAAT TCGACAGCGG CGAACTGATC
AAGCAGGTGT TTCCTCAACA TAACGGCACC GGCATGCAGG GCTTCATGCT GAACACGCGG
CGGTCCTTGT TTCAGGATGT GCGCGTGCGC AAGGCACTCG ATCTCGCGCT CGACTTTCAA
TGGCTCAATC GCCAGTTGTT CTTCAATCAG TACACGCGTA TCGACAGTTT CTTCGCCAAC
ACCGATCTGC AGGCGAAGGG TCTGCCTTCA CCGGGCGAGT TGGCCTTGCT CGAACCGTGG
CGCGCGAAGC TTGACCCGGC CGTGTTCGGT CCGCCGCCGA AGCAGCCGGA CACCGACCCG
CCCGGCTCGC TGCGCGCCAA TCTGCTGGAG GCGCGCGCGC TGTTGCAGCA GGCCGGCTGG
ACCTATCGCG ACGGCGCGTT GCGCAACGCC AAGGGCGAGC CGTTCCGCTT CGAGATTCTC
GACGACTCCG GTTCGTCCGC GCAGATGGAG CCGATCGTCG CGACCTTCAT CCGCAATCTG
CAGAAGCTGG GCATCCAGGC CACGTTTCGC GTGTCGGATT TCGCGGTCTA TCAGAAGCGT
CTGGACGCCT TCGACTTTGA CACCACCACG ATCCGCATGC CGGACGTGCA GGTGCCCGGC
TCCGAGCAGA TCGAACGATT CGGCAGCAAG GCGGCCGATA CGCAGGGTTC CGATAACATG
ATCGGGCTGA AGTCGCCTGT CGTGGATGCG ATCCTGAATG CGCTTGTGCA TGCGCAAACA
CGCGAGCAAC TGGTCGACGC CACGCACGCG CTCGACCGTG TGCTGATGCA TGGCTACTAT
GTCGTGCCGC ATTGGTACAG CGCCACGCAT CGGGTGGCGT TCAAGCGCGG TCTTGCGTGG
CCGAAAACGC TACCCCTGTA CTATTCAGCG GAAGGCTGGA TTACATCGAT GTGGTGGTTC
GCGCAGCCAC CATCGCAATC GCAACCGCCG GCGCAACCTT AA
|
|---|
| Protein sequence | MMCGVLAVAG LLVAPRAHAV YAIAQYGEPK YLADFKHFDY VNPNAPKGGT LVLANPSRLT
SFDKFNPFTL RGNTAPGVDL MFESLTVGSS DEVASAYGLL ADDISIAPDG LSVTFHINPL
ARFSNGDPVT ADDVKFSLDT LKSPQAAPQF ASIFGEITRA VVVDPHTIRF EFHQRNRELP
LLAGGIPVFS RKWGMKPDGS RIAFDQLAFE KPIGSGPYLI EQYDNGRTIT YRRDPNYWGA
ALPVRVGMNN FDRIVYKLYS DNTARLEAFK AGEYDALVEY VARNWVRRDV GKKFDSGELI
KQVFPQHNGT GMQGFMLNTR RSLFQDVRVR KALDLALDFQ WLNRQLFFNQ YTRIDSFFAN
TDLQAKGLPS PGELALLEPW RAKLDPAVFG PPPKQPDTDP PGSLRANLLE ARALLQQAGW
TYRDGALRNA KGEPFRFEIL DDSGSSAQME PIVATFIRNL QKLGIQATFR VSDFAVYQKR
LDAFDFDTTT IRMPDVQVPG SEQIERFGSK AADTQGSDNM IGLKSPVVDA ILNALVHAQT
REQLVDATHA LDRVLMHGYY VVPHWYSATH RVAFKRGLAW PKTLPLYYSA EGWITSMWWF
AQPPSQSQPP AQP
|
|---|
| |