| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2489 |
|---|
| Symbol | |
|---|
| ID | 6284295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 2809379 |
|---|
| End bp | 2810194 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642622043 |
|---|
| Product | haloacid dehalogenase, type II |
|---|
| Protein accession | YP_001896109 |
|---|
| Protein GI | 187924467 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.154459 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.000896523 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGCCA CAACGACACT CTCCCCTAAA GCGGTGATTT TCGACGCCTA CGGCACGCTT
TTCGACGTGC ATTCGGTGAT CGCTGCCGCA GAGCAAATGT TCCCCGGCCA CGGCGACGCA
CTCTCGCAGT TGTGGCGGCA AAAACAGATC GAATACACGC AGCTGCGCAC GCTCGCCGAT
TCCGCGGATG CAGCCGGCGC GCACTACCGA CCGTTCTGGG ACATCACGCT CGACGCGTTG
CGCTTCGCCG CAAAAAAACT TCAGCTTTCG CTGGGGCGCG CGGCCGAGAA GCGTCTGATG
GACGAATACG CGTGCCTCTC CGCTTTCCCC GATGCCGTGC CCGCGCTGCG CCAGTTGCGC
GAAGCTGCCC CTGACCCGGC AGCGCGCGCG GGTGGCGAAT CCGCCCCACG TCCACGCCTC
GCGATTCTCT CGAACGGCAA TCCGCAAATG CTCGACATCG CCGTGAAGAG CGCCGGCATG
ACGCGCCTGT TCGACCGCGT TCTATCCGTC GACACCGTGC GCGCCTACAA ACCCTCGCCC
GCCGCTTACG CGCTCGGCAC GCAAGCCTTT GACGCGCAGC CGCGCGAGAT CGTCTTCGTG
TCGTCGAACG GTTGGGACGT GGCGGGCGCG ACGTGGTTCG GCTTCACCAC TTTCTGGCTC
AACCGGCAAA ACGCCCCAGC CGAAGAACTG GGCGTCACGC CGCACGGCGT GGGCGGAGGC
ATGGCCGATC TGCTCGCTTT TCTGAAGAAC CCCGCGTCGT CCGGCCGCAG CAGCGGCGCC
GGCGGCAGCC GCACGCGCCA CAGCCCTGGC GCATGA
|
|---|
| Protein sequence | MSATTTLSPK AVIFDAYGTL FDVHSVIAAA EQMFPGHGDA LSQLWRQKQI EYTQLRTLAD
SADAAGAHYR PFWDITLDAL RFAAKKLQLS LGRAAEKRLM DEYACLSAFP DAVPALRQLR
EAAPDPAARA GGESAPRPRL AILSNGNPQM LDIAVKSAGM TRLFDRVLSV DTVRAYKPSP
AAYALGTQAF DAQPREIVFV SSNGWDVAGA TWFGFTTFWL NRQNAPAEEL GVTPHGVGGG
MADLLAFLKN PASSGRSSGA GGSRTRHSPG A
|
|---|
| |