| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2473 |
|---|
| Symbol | |
|---|
| ID | 6284535 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 2789984 |
|---|
| End bp | 2791936 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 650 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642622027 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001896093 |
|---|
| Protein GI | 187924451 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0000325943 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGATCCGCT TTAACCAGTT CAGTCTCGCG CGCGGCACCA AGCCGCTCTT CGACAACACC
ACGTTCACCC TCAACCCCGG CGAGAAGGCC GGGCTGGTGG GGGCGAACGG CGCGGGCAAG
TCGACGCTGT TCGCCGTGCT GCTCGGCGAA TTGCACGCGG ACGGCGGCGA TTTTTCGATC
CCGCCGAACT GGCAGATCGC CCACGTCGCG CAGGAAACGC CCGCCGCGGA CAAAACCGCC
CTCGCCTACA CGCTGGACGG CGACGCCGCC TTGCGCGTGA TCGAAGCGGC GATTGCCGCC
GCCTCCGCCG CGCACGACGG CGCGGCTGAA GGCGAAGCGC ACGCCGCGTT CGCCGACGCC
GACGGCTACA CCGCGCCCGC GCGCGCCGAA GCCCTGCTGC TCGGCCTCGG CTTCACGCTC
GACCAGACCC GCGAGCCGGT CAGCAGCTTC TCGGGCGGCT GGCGCATGCG GTTGAATCTG
GCGCAGGCGC TGATGTGCCG CTCCGATCTG CTGCTGCTCG ACGAACCGAC CAACCACCTG
GATCTCGACG CGATCGTCTG GCTGGAAGAC TGGCTGGCCC GCTACCCCGG CACGCTGATC
GTGATCTCGC ACGACCGCGA ATTTCTCGAT TCGGTCTGCA ATGTCACGCT GCATCTGGAG
CAGCAGCAGA TCAAACGCTA CGGCGGCAAC TACTCGCAAT TCGAAGTGCT GCGCGCGCAG
CAGATCGCGC TGCAGCAAAG CGCGTACGAG AAACAGCAGC GCACGGTCGA GCATTTGCAG
AGCTACATCA ACCGCTTCAA GGCACAGGCC ACCAAAGCGC GCCAGGCGCA GAGCCGCGTC
AAGGCGTTGG AAAAGATGGA ACTGATCGCG CCGGCGCACG CGTCCTCGCC ATTCACGTTC
GAATTCCGCA CGCCCGATTC CGCACCGAAC CCGATGATGG TGATGGAAGA CGTGCGCTGC
GGTTACCGTA GCGAGGGCGA ACCCGTTGTC GAGATTCCGA TCGTCGATCA CGTCATGCTG
TCGATCCAGA ACGGTCAGCG CATCGGGCTG CTCGGCGCGA ACGGCCAAGG CAAGTCCACG
CTGATCAAGA CGCTTGCCGG CACGCTCGAG GCGCTCGGCG GCCATGTGCG CGAAGGCAAG
GGGCTGCGGA TCGGCTACTT CGCGCAGCAT CAGCTCGAAA CACTGCGTCC GGACGACACC
CCGTTGCAGC ACCTCGCGCG TCTCGCACCG GACACGCGCG AGCAGGAATT GCGCGACTTC
CTCGGCAGCT TCAATTTTTC CGGCGAGATG GCGACGTCGA AAATCGCACC CTTCTCCGGC
GGAGAAAAGG CCCGCCTCGC GCTCGCGCTG ATCATCTGGC AAAAGCCGAA CCTGCTGCTT
CTCGACGAAC CGACCAACCA CCTGGACCTC GAAACGCGTC ACGCGCTGAC CATGGCGCTC
GCGCAGTTCG AGGGCACGCT GATTCTGGTG TCGCACGACC GGCATCTACT GCGCGCCACC
ACGGATCAAT TCATGCTGGT CGCGAAACAT CGACTGCAGG AATTCGATGG CGACCTCGAC
GACTATCGCG ACTGGCTGCT CCAGCATGCG GCTGAGCAAC GCGCGGCGCT CAAGGCGGGC
GCGGCGTCGA GCGGCGCGAA TGGCGGTGAT GGCGCGGACA ACGGCGTGAA CCGCAAGGAA
CAGCGGCGCC TCGAGGCGGA AACGCGTCAG AAGCTTGCGC ATCTGAAAAA ACCGCTGCAA
AGCCGGATCT CGAAGATCGA GAAGGAAATG GACGCGCTCA ACGCGGAGAA GGCGACGCTC
GATGCGTTCG TCGTCGATCC GGCGAGTTAT GAGCCCGAGC AGAAAAGCAA ACTGACGGAG
GCGATTCGCC GTCAGGCAGA TGTGAACGCG CGCCTCGAAG CGCTCGAAGC CGAATGGCTC
GAGACTCACG AGGAACTCGA ACAAATCGGC TAG
|
|---|
| Protein sequence | MIRFNQFSLA RGTKPLFDNT TFTLNPGEKA GLVGANGAGK STLFAVLLGE LHADGGDFSI
PPNWQIAHVA QETPAADKTA LAYTLDGDAA LRVIEAAIAA ASAAHDGAAE GEAHAAFADA
DGYTAPARAE ALLLGLGFTL DQTREPVSSF SGGWRMRLNL AQALMCRSDL LLLDEPTNHL
DLDAIVWLED WLARYPGTLI VISHDREFLD SVCNVTLHLE QQQIKRYGGN YSQFEVLRAQ
QIALQQSAYE KQQRTVEHLQ SYINRFKAQA TKARQAQSRV KALEKMELIA PAHASSPFTF
EFRTPDSAPN PMMVMEDVRC GYRSEGEPVV EIPIVDHVML SIQNGQRIGL LGANGQGKST
LIKTLAGTLE ALGGHVREGK GLRIGYFAQH QLETLRPDDT PLQHLARLAP DTREQELRDF
LGSFNFSGEM ATSKIAPFSG GEKARLALAL IIWQKPNLLL LDEPTNHLDL ETRHALTMAL
AQFEGTLILV SHDRHLLRAT TDQFMLVAKH RLQEFDGDLD DYRDWLLQHA AEQRAALKAG
AASSGANGGD GADNGVNRKE QRRLEAETRQ KLAHLKKPLQ SRISKIEKEM DALNAEKATL
DAFVVDPASY EPEQKSKLTE AIRRQADVNA RLEALEAEWL ETHEELEQIG
|
|---|
| |