| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2466 |
|---|
| Symbol | |
|---|
| ID | 6283310 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 2782750 |
|---|
| End bp | 2783967 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642622020 |
|---|
| Product | succinyldiaminopimelate transaminase |
|---|
| Protein accession | YP_001896086 |
|---|
| Protein GI | 187924444 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | [TIGR03538] succinyldiaminopimelate transaminase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.000138526 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAATCCGC TACTCGACTC CCTTCAGCCC TACCCGTTCG AAAAGCTGCG CGCGCTTTTC
GCGGACGTCA CGCCGAGCGC CGGCCTCGCG CATATCAGCT TCGGCATCGG CGAGCCGAAA
CATCCGACGC CCGAATTGAT CCGTGACGCC GTGGTGGCTT CGCTCGGCGG CTTGTCGTCG
TATCCGGCCA CGATCGGATC GCCGGCGCTG CGCGAGTCGA TCGCGAAGTG GGTCACGCGG
CGCTACAACC TGCCGCCGGT CGATCCGGCC ACCCAGGTGC TGCCGGTGTC GGGTTCGCGC
GAGGCGTTGT TCGCGCTCGC CCAGACCGTG CTCGACCCGA AAAAGAATGC TGACGGCGAG
CCTGCGATCG TACTCTGTCC GAACCCGTTC TACCAAATCT ACGAAGGCGC CGCGATTCTG
GCCGGCGCGC AGCCGTACTT CGTGAATAGC GACCCGGCGC GCAACTTCGC CTGCGACTAT
TCTGCGGTGC CGGCCGACAT CTGGGCGCGC ACGCAACTGC TGTATGTCTG CTCACCGGGC
AATCCGACCG GCGCGGTGCT CACGCTCGAC GACTGGCGCG AACTGTTCGC GCTGTCGGAC
CGCTACGGCT TCGTGATCGC TTCGGACGAG TGCTACTCCG AAATCTATTT CGACGAAGCC
AACCCACCGC TCGGCGGCCT GGAAGCGGCG CACAAGCTCG GCCGAGGCTT CGAGCGCCTT
GTGATGCTGT CGAGCCTGTC CAAGCGCTCG AACGTGCCGG GCATGCGCTC AGGCTTCGTC
GCGGGCGACG CGGCGATTCT CAAGGACTTC CTGCTATACC GGACATACCA CGGCGCGGCC
TTGTCGACGG TGTTCCAGAG TGCCAGCATC GTGGCCTGGA ACGACGAGAC GCACGTGCGC
GAGAACCGCG CGAAGTACGT GCAGAAGTTT TCCACCGTCA CGCCGATGCT CGCCGAGGTG
CTCGACGTGC GCCTGCCGGA CGCCGCGTTC TACCTGTGGG CGGACGTCTC GCGCACGGGC
CTCACGGATA CCGAGTTCGC CCAGCGCCTC TACGCCGACT ATAATGTGAC GGTTCTGCCG
GGCTCGTTCC TCGCGCGCAC TGCGCACGGC GTGAACCCCG GCCGCAATTT CGTGCGCATG
GCGCTCGTCG CCGGCGTCGA CGAATGCACA CAGGGCGCGC AGCGAATCGT CGATTTTTGC
CGCGCGCTGG CAGGTTGA
|
|---|
| Protein sequence | MNPLLDSLQP YPFEKLRALF ADVTPSAGLA HISFGIGEPK HPTPELIRDA VVASLGGLSS
YPATIGSPAL RESIAKWVTR RYNLPPVDPA TQVLPVSGSR EALFALAQTV LDPKKNADGE
PAIVLCPNPF YQIYEGAAIL AGAQPYFVNS DPARNFACDY SAVPADIWAR TQLLYVCSPG
NPTGAVLTLD DWRELFALSD RYGFVIASDE CYSEIYFDEA NPPLGGLEAA HKLGRGFERL
VMLSSLSKRS NVPGMRSGFV AGDAAILKDF LLYRTYHGAA LSTVFQSASI VAWNDETHVR
ENRAKYVQKF STVTPMLAEV LDVRLPDAAF YLWADVSRTG LTDTEFAQRL YADYNVTVLP
GSFLARTAHG VNPGRNFVRM ALVAGVDECT QGAQRIVDFC RALAG
|
|---|
| |