| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2461 |
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| Symbol | |
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| ID | 6281898 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 2773742 |
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| End bp | 2775808 |
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| Gene Length | 2067 bp |
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| Protein Length | 688 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642622015 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_001896081 |
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| Protein GI | 187924439 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0455112 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.000280706 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCCCGAA CCTCCGCCTC ACATCCCGCA ACCAGCGCCC CGGCAGAGCG AGCCGCGTGG
CTGCGCGCGG AACTCGAACG CGCCAACTAC GCGTACTACG TGCTCGACCA GCCGGACCTG
CCCGACGCGG AATACGACAA GCTGTTCAAG GAGCTGGAAA GTATCGAGAC GGAGCATCCG
GATCTGATCG TGCCGGATTC GCCCACCCAG CGCGTGGGCG GCGAGGCGGC GAGCGGCTTC
GAGCCGGTCG TGCACGACCA GCCCATGCTG TCGCTGAACA ACGGTTTCGC CGACGAAGAC
ATCGTCGCGT TCGACAAACG CGTCGGCGAC GCGCTCGGCA AGAACGCGAG CGAGCCGCCG
GTGCCGGTCG ACTACGCGGC GGAACTGAAA TTCGACGGCC TCGCCATCTC GCTGCGTTAC
GTCGACGGCG CGTTCGTGCA AGCCTCCACG CGCGGCGACG GCACGACTGG CGAGAACGTC
ACCGAAAATG TCCGCACGAT TCGCTCCATT CCGCTCAAGC TCAAGGGCAA ACGCGTGCCG
CACGTGCTCG ACGTGCGCGG CGAAGTGCTG ATGTTCAAGC GCGATTTCGA GCGTCTGAAC
GAGCGTCAAC GGGCTGCGGA ACAGAAGGAA TTCGCTAATC CGCGCAACGC CGCGGCGGGC
AGTTTGCGGC AGCTCGATTC GAAGATCACC GCGCAGCGGC CACTGTCGTT TTTCGCTTAT
GGCATTGGCG TGCTCGAAGG CATGGAGATG CCCGCCACGC ATAGCGAACT GCTCGACTGG
TACAAGGAAC TCGGCTTGCC GGTGAATAGC GAGCGAGCAG TGGTGCAGGG CGCCGAGGGC
TTGCTGGGCT TTTTCCACGG CGTCGGCGAG AAACGCGAGA AGCTGCCGTA CGACATCGAC
GGCGTGGTCT ACAAGGTCAA CCGGCGCGAT GAGCAGGATG CGCTTGGCTT CGTGTCGCGC
GCGCCGCGCT TCGCGTTGGC GCACAAATTC CCCGCGCAGG AGGCGCTGAC CAAACTCGTC
GCGATCGACG TGCAAGTCGG CCGGACCGGC GCGATCACGC CGGTAGCGCG GCTGGAGCCG
GTGTTCGTCG GCGGCGCGAC GGTCACGAAT GCCACGCTGC ACAACGAAGA CGAAGTGCGC
CGCAAGGATA TCCGCATCGG CGACACGGTG ATCGTTCGGC GCGCCGGTGA CGTGATACCC
GAAGTGGTGA GCGCGCTGCT CGATCGTCGT CCTTCCGACG CACGCGAATT CGTGATGCCC
ACGCAGTGTC CGGTGTGCGG TTCGAGCATT GAGCGCCTGC CGGACGAGGC GATCGCGCGT
TGTACCGGCG GCCTGTTTTG CCCCGCGCAG CGCAAGCAGG CGCTCTGGCA TTTCGCGCAG
CGGCGCGCGC TGGATATCGA CGGCCTCGGC GAGAAAATCA TCGATCAACT GGTCGAACAG
AACCTCGTGC GCACGCCGGC CGATCTGTTC AATATCGGTT TTGCGACGCT TGCCGAACTC
GACCGCTTTG CCGAAAAGTC CGCGCAAAAT CTGCTCGACT CGCTCGAAAA GGCCAAGCAC
ACCACGTTGG CGCGCTTCAT CTACGCGCTC GGCATCCGGC ATGTGGGCGA ATCCACGGCG
AAAGATCTCG CCAAGCACTT CGGCTCGCTC GATCCGATCA TGGACGCCTC GGTCGAAGCC
TTGCTGGAAG TCAACGACGT AGGGCCGGTG GTCGCGGAAT CGATCCATCA GTTCTTCGCC
GAGGAGCACA ACCGCACGGT GATCGAGCAG TTGCGCGCGC CGGGCAAAGT CACGTGGCCC
GAAGGCCCGC CCGCGCCGAA GGCGCCGCAA GGCGTGCTGG CCGGCAAGAC GGTCGTACTG
ACCGGCACCT TGCCGAGCCT GGCCCGCGAA GAGGCGAAGG AAATGCTGGA AGCGGCCGGC
GCGAAAGTGG CCGGCTCCGT ATCGAAGAAA ACGGACTATC TGGTGGCGGG CGCCGACGCG
GGCAGCAAGT TGGCGAAGGC TGAGGAACTC GGCGTTCCCG TACTCGACGA AGATGGTATG
CGTAAGCTCC TGGAGGGGCA GTTATGA
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| Protein sequence | MARTSASHPA TSAPAERAAW LRAELERANY AYYVLDQPDL PDAEYDKLFK ELESIETEHP
DLIVPDSPTQ RVGGEAASGF EPVVHDQPML SLNNGFADED IVAFDKRVGD ALGKNASEPP
VPVDYAAELK FDGLAISLRY VDGAFVQAST RGDGTTGENV TENVRTIRSI PLKLKGKRVP
HVLDVRGEVL MFKRDFERLN ERQRAAEQKE FANPRNAAAG SLRQLDSKIT AQRPLSFFAY
GIGVLEGMEM PATHSELLDW YKELGLPVNS ERAVVQGAEG LLGFFHGVGE KREKLPYDID
GVVYKVNRRD EQDALGFVSR APRFALAHKF PAQEALTKLV AIDVQVGRTG AITPVARLEP
VFVGGATVTN ATLHNEDEVR RKDIRIGDTV IVRRAGDVIP EVVSALLDRR PSDAREFVMP
TQCPVCGSSI ERLPDEAIAR CTGGLFCPAQ RKQALWHFAQ RRALDIDGLG EKIIDQLVEQ
NLVRTPADLF NIGFATLAEL DRFAEKSAQN LLDSLEKAKH TTLARFIYAL GIRHVGESTA
KDLAKHFGSL DPIMDASVEA LLEVNDVGPV VAESIHQFFA EEHNRTVIEQ LRAPGKVTWP
EGPPAPKAPQ GVLAGKTVVL TGTLPSLARE EAKEMLEAAG AKVAGSVSKK TDYLVAGADA
GSKLAKAEEL GVPVLDEDGM RKLLEGQL
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