| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2448 |
|---|
| Symbol | |
|---|
| ID | 6282079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 2759226 |
|---|
| End bp | 2760611 |
|---|
| Gene Length | 1386 bp |
|---|
| Protein Length | 461 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642622002 |
|---|
| Product | membrane-associated zinc metalloprotease |
|---|
| Protein accession | YP_001896068 |
|---|
| Protein GI | 187924426 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
|---|
| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.699947 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.00215564 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTGC TGATCGAACT GCTCGCCTTC GCGGTCGCGA TTGGCGTACT CGTGGTCGTC
CACGAATATG GGCACTACAG CGTGGCACGC CTGTGCGGCG TCAAGGTGCT GCGCTTTTCG
ATCGGCTTCG GCAAGCCGCT ATTCCAGTGG GTGAGTCCGA AGACGGGCAC CGAATGGACC
ATTGCCGCGC TGCCGCTCGG CGGCTACGTG AAGATGCTCG ACGAGCGCGA AACGAGCGCC
GAACCGATTC CTGCCGAAGC ACTGCCGCAC GCGTTCAACC GGCAGTCCGT GTGGCGCCGT
TTTGCGATTG TCGCGGCCGG TCCGGTCGCG AACTTCCTGC TGGCCATCGT GCTGTTCGCG
CTCGTCTTCG CCACCGGCGT GACGGAGCCT GCGGCGGTGG TCGCGGCGCC CGCGCCGAAT
ACGCCCGCGG CTGTTGCCGG TTTCGACGGC GGTGAAACGA TCGTTGCCGT GCGTGCCGAG
AACGCCGGCG AATCCGAGCC GGTGCGTTCG TGGTCGGACC TGCGCTGGAA GCTGCTCGGT
GCGGCATTCG ATCACAAGCG CGTCGTGCTG AGTGCAAAAG ACGCACACGG TACCTCGGAT
TTCCAGCTCG ATCTGCGCGG CCTCACCGAA AAAGATGTCG ACGACGACTT CATGTCGCAT
CTCGGTTTCG AACCGGGTGG TGGCAAGCTG ACGGTTGCGG GTGTGCAGCC GGGTAGCGCG
GCGCAAAAGG CGGGTCTCGC CGCAGGCGAT CGTCTGCGTG CCGTTGATGG TATTCCTACC
GATAACGCCA CGGCCTTCAT CGCTTATGTA AAATCGCACG CCGGCAAAGC GGTGACGCTG
CAGGTGGAGC GCGGCGGTAA GGCGGCGGGC AAGCTCGAAG ACGTGAACAT CGTGCCGCAG
GCACAGCGCG ATGAAACGAC CGGGCAGCAG ATCGGCCGCA TCGGCGCGGA ACTGGCCACG
CAGGTGCCGT CGATCGACGT GCGTTACGGA CCGATTGAAA GCCTCCAGTT GGGTGCGCGC
CGCACGTGGG ATCTCGCGGT TTACTCGGTG CGCATGTTCG GCAGGATGAT CGTAGGCGAG
GCATCGCTGA AAAATCTTTC CGGTCCGGTG ACGATCGCCG ATTACGCAGG AAAGAGCGCA
CGTCTAGGTC CTTCTGCATT CCTGTCGTTC CTGGCCCTTG TCAGTATTAG CCTTGGTGTA
CTGAACCTGT TACCAATTCC GGTATTGGAC GGGGGTCATC TGTTATATTA TTTGGTTGAA
GCTGTGACCG GTAAAGTTGT CTCCGATCGC TGGCAACTCG TTTTTCAGAG GGCGGGTCTC
GCCTGCATCG TCGCATTGTC GGCGATCGCG CTGTTCAACG ATCTGGCTCG TTTAATCCAT
TTTTAA
|
|---|
| Protein sequence | MNLLIELLAF AVAIGVLVVV HEYGHYSVAR LCGVKVLRFS IGFGKPLFQW VSPKTGTEWT
IAALPLGGYV KMLDERETSA EPIPAEALPH AFNRQSVWRR FAIVAAGPVA NFLLAIVLFA
LVFATGVTEP AAVVAAPAPN TPAAVAGFDG GETIVAVRAE NAGESEPVRS WSDLRWKLLG
AAFDHKRVVL SAKDAHGTSD FQLDLRGLTE KDVDDDFMSH LGFEPGGGKL TVAGVQPGSA
AQKAGLAAGD RLRAVDGIPT DNATAFIAYV KSHAGKAVTL QVERGGKAAG KLEDVNIVPQ
AQRDETTGQQ IGRIGAELAT QVPSIDVRYG PIESLQLGAR RTWDLAVYSV RMFGRMIVGE
ASLKNLSGPV TIADYAGKSA RLGPSAFLSF LALVSISLGV LNLLPIPVLD GGHLLYYLVE
AVTGKVVSDR WQLVFQRAGL ACIVALSAIA LFNDLARLIH F
|
|---|
| |