| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2428 |
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| Symbol | |
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| ID | 6281047 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 2732390 |
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| End bp | 2737903 |
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| Gene Length | 5514 bp |
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| Protein Length | 1837 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642621982 |
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| Product | PAS sensor protein |
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| Protein accession | YP_001896048 |
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| Protein GI | 187924406 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0515] Serine/threonine protein kinase
[COG3899] Predicted ATPase
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.787008 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.842881 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGATGG ATAACAGCCT TCAGATTGTG TGGAATGACG GCCAGCGAGC CGTCAGTCGG
GAACGGCGCG CAGGCGAGGC CGGCGAACGC GACGTCCTGC TTGCGCGGGC CGCCGCCGAA
CAGCCCCGGC CCGACAGCGT CGATCAACTA GCTCACGAGT TTGGCCTGAA AGACGAACTC
GATAGTGCGT GGGCCGTGCG GCCGCTGGAG CTGATGCGCG AAGGTAGCCG GACACTGCTC
GTACTCGAGG ATCCGGGCGG CGGGCCGCTT GCGCACCTGT TAGGCGCGCC GCTGGAGATA
GAAGATTCTT TGCGGCTCGC TGTCGGGATA GCCGCGGCGC TCGGCCGGCT TCATCAACGC
GGTCTCGTCC ACAAGGATCT CAAGCCCACT CATATCATGG TGAACTGCGC CGACGGCCGC
GTGCGCCTCA CCGGCTTCGG CCTCGCTTCG CGTCTGCCGC GCGAGCGGCA AGCTCCCGAG
CCGCCCGAGA CCATCGCGGG CACGCTGGCC TACATGGCGC CCGAGCAGAC CGGCCGGATG
AACCGCTCGA TCGATTCGCG CAGCGACCTC TACGCGCTCG GCGTCACGCT CTACCAGATG
CTGACGGGCG CGCTGCCATT CATGGCCGCA GACCCGACTG AATGGGTGCA CTGCCATATA
GCGAGAAAGC CGGTGGCGCC GAGCGCGCGG CTTGCTACCG TCCCCGCTGC GATCTCCCAT
ATCGTCATGA AGCTGCTCGC CAAGACGGCC GAAGAGCGCT ACCAGACCGC CGCCGGGGTC
GAGCGCGATC TGCGGCTGTG TCTCGCCGAC TGGCGGCGTC AGCGCCGCAT CGATGACTTT
CCGCTCGGCG AGCACGACAG CCCCGACCGG CTACTCATTC CCGAGAAGCT GTACGGCCGG
GAGCACGAAG TCGAGATACT GGTCGCCGCA TTCGACCGGA TCGTCGGCAG CGGCGTGCCG
GAGCTGGTGC TCGTGACCGG CTATTCCGGC ATAGGCAAAT CCTCGGTCGT TAATGAACTG
CACAAAGTGC TGGTGCAGCC GCGGGGACTC TTCGCGGCCG GCAAGTTCGA CCAATACAAG
CGCGATATCC CCTATGCGAC GCTCGTGCAG GCATTCCAGA GCCTCGTGCG GCCGCTGCTC
GGCAAGCGCG ACGCCGATCT GGCGAGTTGG CGCGACGCGT TGCTCGCGGC GCTGGACGTC
AACGCCGGGC TCATGACCGA CCTCATTCCC GAGCTGAAGC TCATCATCGG CGAGCCGCCT
CCCGTCCCGG ACCTTGCGCC ACAGCAGGCG CAGCATCGCT TCATGCAGGT GTTCCGGCGT
TTCATCGGCG TGTTCGCCCG TGCCGAACAT CCGCTGGCGC TCTTTCTCGA CGATCTGCAG
TGGCTCGACG CGGCCACGCT CGATTTGCTC GAGGATCTGT TGATCCGCCC GGAACTGCGA
TATCTGATGC TGGTCGGTGC CTATCGCGAC AACGAGGTCG ATGGCACGCA TCGGCTGACG
GGCAAACTCC AGGCGATCGG GAGCGCCGGT GTGAGGATCA ATCAGATCAC GCTCGCGCCG
CTCGCCCGTG CCCATGTCAG CCAGCTGATC GGCGAAGCGC TTCACTGCGA GCCGGCGCGA
ACCGAGCCTT TGGCGCGACT GGTCCATGAG AAGACCGCGG GCAATCCGTT TTTTGTGATC
CAGTTCCTGC ATGCACTGGC CGAACGGGAT CTACTCACCT TCGACCACGA CGCCGGACAG
TGGCGCTGGG ATCCCGATCG CATCCATGCC ACGGGTTACA CCGATAACAT CGTGGATCTC
ATGGTCGGCA AGCTGAGCCG GCTGCAGGGG CAAACGCAGC AGGCGTTGCA GCAGTTGGCC
TGTCTCGGCA ACGTCGCCGA AATCACGACG CTCTCGACCG TTCTCGGCGT GGCGCAGACG
CAGCTCCACT CGGCGTTATG GGAAGCGGTC CGCCAGGAAC TGGTCGAGCG GCTGGGCGGC
TCGTACCGGT TTGCTCACGA CCGGATTCAC GAAGCCGCCT ATTCATTGAT CCCGCCAGCC
TCGCGCGCGC AGGCGCATCT GCGGATCGGC CGGCTGCTTG CTGCAGAGAC GCCGGCGGAA
AACCGCGAGG AAGCGATCTT CGAAATCGTC GGGCAGCTCA ATCGCGGCGC GGCCCTGATC
ACGTCACGCG ACGAACGCGA GCGACTGGCC GGATTCAACC TGCTCGCCGC CCAGCGCGCC
AAAGCGTCGG CGGCCTATGG CTCGGCGCTC ACCTATCTGG TCACCGGCAT CGGACTACTG
GACGACGATT GCTGGGAGCG CCGGCATGAA CTGATCCTCG CGCTGGAATT GAACCGGGCC
GCCTGCGAGT TTCTGACTGG CCAGCTTTCC ACCGCCGACG AGCGTCTGGC GTCGCTGTCG
CAGCGGGCCG CCACCACGGT CGAACAGGCC AGCGTGGCCT GCCTGCATAC GGATGTCTGT
ACCACTCTCG ACCGGAGCGA TCGCGCCGTT GCCGTGTGTC TCGACTATTT GCGGCATGTC
GGCTTCGAGT GGTCCCCCCA TCCGGACGAC GAGACGGTTC GACGCGAATA CGAACGCATC
GGCTCACTGC TTGGGAAGCG CGCCATCGAG GCCCTCATCG ACCTGCCGCT CATGCAGGAC
CCCGCCTCCC TCGCGACCGC CGAGGTTCTG AGCAAGCTCC TGCCGCCGGC CGTGCAGACG
GATGCGAATC TCGCTTCCCT GACGATCTGC AAAGCAGTCA GTTTTAGCCT CGAACGGGGC
AATTGCGATG CTTCATGTGT GCCCTATATC ATGCTCTGCC GAATCGCCGG GCCGCGTTTC
GGCGACTACC AGGCTGGCTT TCTATTCGGC CAGCTTGGCT ATGAACTGGT CGAGCGGCGC
GGCCTTAAGC GCTTCGAGGC GAGCACCTAT CACTGCTTCG CGGTATTCGT GGTGCGCTGG
ATGAAACACG TGCGGGTTTG CCGCAATCTG CTGCGCCGCG CGCTCGAAGC GGCCAACCGG
ATCGGCGATC TCACGTATGG AGCCTACACG TGCCAACACC TCAACTCGAA CCTGCTGTTC
GCCGGCGACC CGCTACCCGA GGCGCAAGGC GAAGCCGAGC GCGGCCTTGC GTACGCCGAG
AAGGTGCGGT TCGGTCTCGT CATCGACTTC ATCAGTACGC AACTCGCGCT GATCCGGATG
CTCCGCGGCC GGACGCCGAC GTTCGGCTGC CTCGACGACG GACGGTTCAG TGAGCGTCAT
ATCGAAGAGC ATCTGTCGAA CAATCCGACC CTCGCGCTCG CCGCGTGCCT GTACTGGATC
CGGAAACTGC AGGCGCGCTA TCTCGCCGGC GACTATGCCG TCGCCATGGA CGCCGCGTCG
AAGGCGCAAC AGCTGCTCTG GACCTCGGCG TCGTTCCTCG AGGAAGCCGA GTTTCATTTT
TACGCCGCGC TGGCTCGTGC CGCATGGTGC GACGCCGTTC CGGGCGGAGA ACGAACGCAA
CACCTGAACG CAGTCGCCGC ACATCACCGG CAGCTTCGGA TATGGGCCGC CAACTGCCCG
GAGAATTTCG CCAACCGCGT CGAGCTGGTC GGCGCCGAGA TGGCGCGAAT CGAAGGCCGC
GTGCTCGATG CTGAAAACCT TTACGAGCAA GCCATCCGCT CGGCGCAGGA AAGCGGCTTT
GTCCACAACG AGGCGCTCGC CTATGAACTC GCGTCACGGT TTTACTCGGC GCGCGGTTTT
GCAAGGATCG CCCGCCTCTA TCTGCAGGAG GCCCGCTACG GCTACCTGCG TTGGCGCGCC
GACGGCAAGG TGCGCCAACT CGAGGAGCGC TATCCGGACT TGCGAACGGA GGAACTCGCG
CCAGGCCCGA CCACCACGAT CGCAACGCCC GTCGAACGCC TCGACCTCGC GACCGTGATC
AAGGTGTCAC AGGCCGCTTC GGGCGACATC GTGCTGGACA AGCTGATCGA TATGATCATG
CGGACGGCCG TCGAACAGGC CGGCGCGCAG CGTGGCTTGC TGATCCGGTC GAACAGCGGC
GAACAGTGGA TTGCCGCGGA AGCGACGACC GACGGCGACG CAACCCGGTT GCAAGTGCGC
GACATGCCTG TAAGTGCCGC GTCGCTACCG GAATCGATGC TCTACCACGC CCTTCGCACC
CGCGAGAACA TCATTCTCGA CGATGCCGCA AGCGACTCTC CATTTGCCGC GGATTCGTAT
ATCCGTCGGC ATCGCACCCG CTCCGTGCTT TGCCTGCCCT TGATGAATCG GGCGCAACTC
ACCGGCGTGC TCTACCTCGA AAATAATCTG ACCGCCGGCG TGTTCAACCC CGCCCGGCTC
GCGGTGCTAA AGCTGGTGGC CTCGCAGGCG GCAATCTCGC TGGAGAACGC TTATCTGTAT
CGCGACCTCG CGGAACGCGA AGCGAAGATC CGCCGCCTTG TCGACGCCAA CATTATCGGC
ATCCTGGTCT GGAATGCCGG CGGTGTCATT CTCGAGGCCA ACGACGCCTT TCTTCGGATG
GTGGGTTATG AGCGGGAAGA TCTCGTGTCG GGTCGCGTAC GCTGGCGGGA CCTGACGCCG
CCGGAGTGGC TTCAGGGCAG CGAGCAGGCT CTCGGGGAGG CGGTGCAAAC GGGCCGCGCC
CCGCCCTATG AGAAGGAGTA CGTGAGGAAA GACGGCAGCC GTGTGGCCGT CATGGTCGGG
TTGGCGACTT TCGAAGCGGG CCGCGAGGAA GGCGTCGCCT TCGTACTCGA CCTGACCGAG
CGCAAGCGCG TGGAGGAACA AGCTCGCCAG AACGAGCGGC GCTATCGCGA GGTACAGGCC
GAATTCGCTC ACGCCAACCG GGTGGCCACG GTCGGCCAGC TTGCGGCGTC GATCGCTCAT
GAAGTCAAGC AACCGATCGC CGCAACGGTG GCCAACGCCG GCGCGGCGCT GTTATGGCTA
AGCGCGCGAC CTCCTGATCT GAGCGAGGCC CGGCAGGCGC TCGAGCGTAT CGTCAACGAC
GGCAGCCGTG CGGGCGACGT GATCAACCGC ATCCGCGATC TGATCCGCAA GGCGCCGCCG
CGCAAGGAAC GGGTGGACAT CAACGCAGCG ATTCATGAGG TGATCGAACT GACCCGCAGC
GAAGCCGCGA GGAGCGGTGC TTCGGTGGAG ACGCAACTCG CGGAGGACTT GCCGTCGATT
GAAGGCGATC GTGTCGAACT GCAACAGGTT CTCCTCAACC TGATCATCAA TGCGCTCGAG
GCGATGAACG ACGTCGGCGA CGGCGTGCGG CACCTGTTCA TCACAACCGT GAAAGTCGAC
TCCGGCTCCG TGCTCGTGAC AGTGCGCGAT TCGGGACCGG GCTTCGCTCC GCAGAGCGCC
GAGCGCGTGT TCGTACCTTT CTACACCACG AAGCCCACTG GCTTGGGGAT GGGGCTGTCG
ATCTGCCGTT CTATCATCGA AGCGCATGGC GGTCGATTGT GGGCAAGCGC GAATTTGCCC
CGTGGCGCCA TCGTTCAATT CACCGTGCCG CCCTATCCAG TCGTTTCATC GTGA
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| Protein sequence | MPMDNSLQIV WNDGQRAVSR ERRAGEAGER DVLLARAAAE QPRPDSVDQL AHEFGLKDEL
DSAWAVRPLE LMREGSRTLL VLEDPGGGPL AHLLGAPLEI EDSLRLAVGI AAALGRLHQR
GLVHKDLKPT HIMVNCADGR VRLTGFGLAS RLPRERQAPE PPETIAGTLA YMAPEQTGRM
NRSIDSRSDL YALGVTLYQM LTGALPFMAA DPTEWVHCHI ARKPVAPSAR LATVPAAISH
IVMKLLAKTA EERYQTAAGV ERDLRLCLAD WRRQRRIDDF PLGEHDSPDR LLIPEKLYGR
EHEVEILVAA FDRIVGSGVP ELVLVTGYSG IGKSSVVNEL HKVLVQPRGL FAAGKFDQYK
RDIPYATLVQ AFQSLVRPLL GKRDADLASW RDALLAALDV NAGLMTDLIP ELKLIIGEPP
PVPDLAPQQA QHRFMQVFRR FIGVFARAEH PLALFLDDLQ WLDAATLDLL EDLLIRPELR
YLMLVGAYRD NEVDGTHRLT GKLQAIGSAG VRINQITLAP LARAHVSQLI GEALHCEPAR
TEPLARLVHE KTAGNPFFVI QFLHALAERD LLTFDHDAGQ WRWDPDRIHA TGYTDNIVDL
MVGKLSRLQG QTQQALQQLA CLGNVAEITT LSTVLGVAQT QLHSALWEAV RQELVERLGG
SYRFAHDRIH EAAYSLIPPA SRAQAHLRIG RLLAAETPAE NREEAIFEIV GQLNRGAALI
TSRDERERLA GFNLLAAQRA KASAAYGSAL TYLVTGIGLL DDDCWERRHE LILALELNRA
ACEFLTGQLS TADERLASLS QRAATTVEQA SVACLHTDVC TTLDRSDRAV AVCLDYLRHV
GFEWSPHPDD ETVRREYERI GSLLGKRAIE ALIDLPLMQD PASLATAEVL SKLLPPAVQT
DANLASLTIC KAVSFSLERG NCDASCVPYI MLCRIAGPRF GDYQAGFLFG QLGYELVERR
GLKRFEASTY HCFAVFVVRW MKHVRVCRNL LRRALEAANR IGDLTYGAYT CQHLNSNLLF
AGDPLPEAQG EAERGLAYAE KVRFGLVIDF ISTQLALIRM LRGRTPTFGC LDDGRFSERH
IEEHLSNNPT LALAACLYWI RKLQARYLAG DYAVAMDAAS KAQQLLWTSA SFLEEAEFHF
YAALARAAWC DAVPGGERTQ HLNAVAAHHR QLRIWAANCP ENFANRVELV GAEMARIEGR
VLDAENLYEQ AIRSAQESGF VHNEALAYEL ASRFYSARGF ARIARLYLQE ARYGYLRWRA
DGKVRQLEER YPDLRTEELA PGPTTTIATP VERLDLATVI KVSQAASGDI VLDKLIDMIM
RTAVEQAGAQ RGLLIRSNSG EQWIAAEATT DGDATRLQVR DMPVSAASLP ESMLYHALRT
RENIILDDAA SDSPFAADSY IRRHRTRSVL CLPLMNRAQL TGVLYLENNL TAGVFNPARL
AVLKLVASQA AISLENAYLY RDLAEREAKI RRLVDANIIG ILVWNAGGVI LEANDAFLRM
VGYEREDLVS GRVRWRDLTP PEWLQGSEQA LGEAVQTGRA PPYEKEYVRK DGSRVAVMVG
LATFEAGREE GVAFVLDLTE RKRVEEQARQ NERRYREVQA EFAHANRVAT VGQLAASIAH
EVKQPIAATV ANAGAALLWL SARPPDLSEA RQALERIVND GSRAGDVINR IRDLIRKAPP
RKERVDINAA IHEVIELTRS EAARSGASVE TQLAEDLPSI EGDRVELQQV LLNLIINALE
AMNDVGDGVR HLFITTVKVD SGSVLVTVRD SGPGFAPQSA ERVFVPFYTT KPTGLGMGLS
ICRSIIEAHG GRLWASANLP RGAIVQFTVP PYPVVSS
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