Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_2428 |
Symbol | |
ID | 6281047 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010681 |
Strand | + |
Start bp | 2732390 |
End bp | 2737903 |
Gene Length | 5514 bp |
Protein Length | 1837 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642621982 |
Product | PAS sensor protein |
Protein accession | YP_001896048 |
Protein GI | 187924406 |
COG category | [K] Transcription [L] Replication, recombination and repair [R] General function prediction only [T] Signal transduction mechanisms |
COG ID | [COG0515] Serine/threonine protein kinase [COG3899] Predicted ATPase [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.787008 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.842881 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGATGG ATAACAGCCT TCAGATTGTG TGGAATGACG GCCAGCGAGC CGTCAGTCGG GAACGGCGCG CAGGCGAGGC CGGCGAACGC GACGTCCTGC TTGCGCGGGC CGCCGCCGAA CAGCCCCGGC CCGACAGCGT CGATCAACTA GCTCACGAGT TTGGCCTGAA AGACGAACTC GATAGTGCGT GGGCCGTGCG GCCGCTGGAG CTGATGCGCG AAGGTAGCCG GACACTGCTC GTACTCGAGG ATCCGGGCGG CGGGCCGCTT GCGCACCTGT TAGGCGCGCC GCTGGAGATA GAAGATTCTT TGCGGCTCGC TGTCGGGATA GCCGCGGCGC TCGGCCGGCT TCATCAACGC GGTCTCGTCC ACAAGGATCT CAAGCCCACT CATATCATGG TGAACTGCGC CGACGGCCGC GTGCGCCTCA CCGGCTTCGG CCTCGCTTCG CGTCTGCCGC GCGAGCGGCA AGCTCCCGAG CCGCCCGAGA CCATCGCGGG CACGCTGGCC TACATGGCGC CCGAGCAGAC CGGCCGGATG AACCGCTCGA TCGATTCGCG CAGCGACCTC TACGCGCTCG GCGTCACGCT CTACCAGATG CTGACGGGCG CGCTGCCATT CATGGCCGCA GACCCGACTG AATGGGTGCA CTGCCATATA GCGAGAAAGC CGGTGGCGCC GAGCGCGCGG CTTGCTACCG TCCCCGCTGC GATCTCCCAT ATCGTCATGA AGCTGCTCGC CAAGACGGCC GAAGAGCGCT ACCAGACCGC CGCCGGGGTC GAGCGCGATC TGCGGCTGTG TCTCGCCGAC TGGCGGCGTC AGCGCCGCAT CGATGACTTT CCGCTCGGCG AGCACGACAG CCCCGACCGG CTACTCATTC CCGAGAAGCT GTACGGCCGG GAGCACGAAG TCGAGATACT GGTCGCCGCA TTCGACCGGA TCGTCGGCAG CGGCGTGCCG GAGCTGGTGC TCGTGACCGG CTATTCCGGC ATAGGCAAAT CCTCGGTCGT TAATGAACTG CACAAAGTGC TGGTGCAGCC GCGGGGACTC TTCGCGGCCG GCAAGTTCGA CCAATACAAG CGCGATATCC CCTATGCGAC GCTCGTGCAG GCATTCCAGA GCCTCGTGCG GCCGCTGCTC GGCAAGCGCG ACGCCGATCT GGCGAGTTGG CGCGACGCGT TGCTCGCGGC GCTGGACGTC AACGCCGGGC TCATGACCGA CCTCATTCCC GAGCTGAAGC TCATCATCGG CGAGCCGCCT CCCGTCCCGG ACCTTGCGCC ACAGCAGGCG CAGCATCGCT TCATGCAGGT GTTCCGGCGT TTCATCGGCG TGTTCGCCCG TGCCGAACAT CCGCTGGCGC TCTTTCTCGA CGATCTGCAG TGGCTCGACG CGGCCACGCT CGATTTGCTC GAGGATCTGT TGATCCGCCC GGAACTGCGA TATCTGATGC TGGTCGGTGC CTATCGCGAC AACGAGGTCG ATGGCACGCA TCGGCTGACG GGCAAACTCC AGGCGATCGG GAGCGCCGGT GTGAGGATCA ATCAGATCAC GCTCGCGCCG CTCGCCCGTG CCCATGTCAG CCAGCTGATC GGCGAAGCGC TTCACTGCGA GCCGGCGCGA ACCGAGCCTT TGGCGCGACT GGTCCATGAG AAGACCGCGG GCAATCCGTT TTTTGTGATC CAGTTCCTGC ATGCACTGGC CGAACGGGAT CTACTCACCT TCGACCACGA CGCCGGACAG TGGCGCTGGG ATCCCGATCG CATCCATGCC ACGGGTTACA CCGATAACAT CGTGGATCTC ATGGTCGGCA AGCTGAGCCG GCTGCAGGGG CAAACGCAGC AGGCGTTGCA GCAGTTGGCC TGTCTCGGCA ACGTCGCCGA AATCACGACG CTCTCGACCG TTCTCGGCGT GGCGCAGACG CAGCTCCACT CGGCGTTATG GGAAGCGGTC CGCCAGGAAC TGGTCGAGCG GCTGGGCGGC TCGTACCGGT TTGCTCACGA CCGGATTCAC GAAGCCGCCT ATTCATTGAT CCCGCCAGCC TCGCGCGCGC AGGCGCATCT GCGGATCGGC CGGCTGCTTG CTGCAGAGAC GCCGGCGGAA AACCGCGAGG AAGCGATCTT CGAAATCGTC GGGCAGCTCA ATCGCGGCGC GGCCCTGATC ACGTCACGCG ACGAACGCGA GCGACTGGCC GGATTCAACC TGCTCGCCGC CCAGCGCGCC AAAGCGTCGG CGGCCTATGG CTCGGCGCTC ACCTATCTGG TCACCGGCAT CGGACTACTG GACGACGATT GCTGGGAGCG CCGGCATGAA CTGATCCTCG CGCTGGAATT GAACCGGGCC GCCTGCGAGT TTCTGACTGG CCAGCTTTCC ACCGCCGACG AGCGTCTGGC GTCGCTGTCG CAGCGGGCCG CCACCACGGT CGAACAGGCC AGCGTGGCCT GCCTGCATAC GGATGTCTGT ACCACTCTCG ACCGGAGCGA TCGCGCCGTT GCCGTGTGTC TCGACTATTT GCGGCATGTC GGCTTCGAGT GGTCCCCCCA TCCGGACGAC GAGACGGTTC GACGCGAATA CGAACGCATC GGCTCACTGC TTGGGAAGCG CGCCATCGAG GCCCTCATCG ACCTGCCGCT CATGCAGGAC CCCGCCTCCC TCGCGACCGC CGAGGTTCTG AGCAAGCTCC TGCCGCCGGC CGTGCAGACG GATGCGAATC TCGCTTCCCT GACGATCTGC AAAGCAGTCA GTTTTAGCCT CGAACGGGGC AATTGCGATG CTTCATGTGT GCCCTATATC ATGCTCTGCC GAATCGCCGG GCCGCGTTTC GGCGACTACC AGGCTGGCTT TCTATTCGGC CAGCTTGGCT ATGAACTGGT CGAGCGGCGC GGCCTTAAGC GCTTCGAGGC GAGCACCTAT CACTGCTTCG CGGTATTCGT GGTGCGCTGG ATGAAACACG TGCGGGTTTG CCGCAATCTG CTGCGCCGCG CGCTCGAAGC GGCCAACCGG ATCGGCGATC TCACGTATGG AGCCTACACG TGCCAACACC TCAACTCGAA CCTGCTGTTC GCCGGCGACC CGCTACCCGA GGCGCAAGGC GAAGCCGAGC GCGGCCTTGC GTACGCCGAG AAGGTGCGGT TCGGTCTCGT CATCGACTTC ATCAGTACGC AACTCGCGCT GATCCGGATG CTCCGCGGCC GGACGCCGAC GTTCGGCTGC CTCGACGACG GACGGTTCAG TGAGCGTCAT ATCGAAGAGC ATCTGTCGAA CAATCCGACC CTCGCGCTCG CCGCGTGCCT GTACTGGATC CGGAAACTGC AGGCGCGCTA TCTCGCCGGC GACTATGCCG TCGCCATGGA CGCCGCGTCG AAGGCGCAAC AGCTGCTCTG GACCTCGGCG TCGTTCCTCG AGGAAGCCGA GTTTCATTTT TACGCCGCGC TGGCTCGTGC CGCATGGTGC GACGCCGTTC CGGGCGGAGA ACGAACGCAA CACCTGAACG CAGTCGCCGC ACATCACCGG CAGCTTCGGA TATGGGCCGC CAACTGCCCG GAGAATTTCG CCAACCGCGT CGAGCTGGTC GGCGCCGAGA TGGCGCGAAT CGAAGGCCGC GTGCTCGATG CTGAAAACCT TTACGAGCAA GCCATCCGCT CGGCGCAGGA AAGCGGCTTT GTCCACAACG AGGCGCTCGC CTATGAACTC GCGTCACGGT TTTACTCGGC GCGCGGTTTT GCAAGGATCG CCCGCCTCTA TCTGCAGGAG GCCCGCTACG GCTACCTGCG TTGGCGCGCC GACGGCAAGG TGCGCCAACT CGAGGAGCGC TATCCGGACT TGCGAACGGA GGAACTCGCG CCAGGCCCGA CCACCACGAT CGCAACGCCC GTCGAACGCC TCGACCTCGC GACCGTGATC AAGGTGTCAC AGGCCGCTTC GGGCGACATC GTGCTGGACA AGCTGATCGA TATGATCATG CGGACGGCCG TCGAACAGGC CGGCGCGCAG CGTGGCTTGC TGATCCGGTC GAACAGCGGC GAACAGTGGA TTGCCGCGGA AGCGACGACC GACGGCGACG CAACCCGGTT GCAAGTGCGC GACATGCCTG TAAGTGCCGC GTCGCTACCG GAATCGATGC TCTACCACGC CCTTCGCACC CGCGAGAACA TCATTCTCGA CGATGCCGCA AGCGACTCTC CATTTGCCGC GGATTCGTAT ATCCGTCGGC ATCGCACCCG CTCCGTGCTT TGCCTGCCCT TGATGAATCG GGCGCAACTC ACCGGCGTGC TCTACCTCGA AAATAATCTG ACCGCCGGCG TGTTCAACCC CGCCCGGCTC GCGGTGCTAA AGCTGGTGGC CTCGCAGGCG GCAATCTCGC TGGAGAACGC TTATCTGTAT CGCGACCTCG CGGAACGCGA AGCGAAGATC CGCCGCCTTG TCGACGCCAA CATTATCGGC ATCCTGGTCT GGAATGCCGG CGGTGTCATT CTCGAGGCCA ACGACGCCTT TCTTCGGATG GTGGGTTATG AGCGGGAAGA TCTCGTGTCG GGTCGCGTAC GCTGGCGGGA CCTGACGCCG CCGGAGTGGC TTCAGGGCAG CGAGCAGGCT CTCGGGGAGG CGGTGCAAAC GGGCCGCGCC CCGCCCTATG AGAAGGAGTA CGTGAGGAAA GACGGCAGCC GTGTGGCCGT CATGGTCGGG TTGGCGACTT TCGAAGCGGG CCGCGAGGAA GGCGTCGCCT TCGTACTCGA CCTGACCGAG CGCAAGCGCG TGGAGGAACA AGCTCGCCAG AACGAGCGGC GCTATCGCGA GGTACAGGCC GAATTCGCTC ACGCCAACCG GGTGGCCACG GTCGGCCAGC TTGCGGCGTC GATCGCTCAT GAAGTCAAGC AACCGATCGC CGCAACGGTG GCCAACGCCG GCGCGGCGCT GTTATGGCTA AGCGCGCGAC CTCCTGATCT GAGCGAGGCC CGGCAGGCGC TCGAGCGTAT CGTCAACGAC GGCAGCCGTG CGGGCGACGT GATCAACCGC ATCCGCGATC TGATCCGCAA GGCGCCGCCG CGCAAGGAAC GGGTGGACAT CAACGCAGCG ATTCATGAGG TGATCGAACT GACCCGCAGC GAAGCCGCGA GGAGCGGTGC TTCGGTGGAG ACGCAACTCG CGGAGGACTT GCCGTCGATT GAAGGCGATC GTGTCGAACT GCAACAGGTT CTCCTCAACC TGATCATCAA TGCGCTCGAG GCGATGAACG ACGTCGGCGA CGGCGTGCGG CACCTGTTCA TCACAACCGT GAAAGTCGAC TCCGGCTCCG TGCTCGTGAC AGTGCGCGAT TCGGGACCGG GCTTCGCTCC GCAGAGCGCC GAGCGCGTGT TCGTACCTTT CTACACCACG AAGCCCACTG GCTTGGGGAT GGGGCTGTCG ATCTGCCGTT CTATCATCGA AGCGCATGGC GGTCGATTGT GGGCAAGCGC GAATTTGCCC CGTGGCGCCA TCGTTCAATT CACCGTGCCG CCCTATCCAG TCGTTTCATC GTGA
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Protein sequence | MPMDNSLQIV WNDGQRAVSR ERRAGEAGER DVLLARAAAE QPRPDSVDQL AHEFGLKDEL DSAWAVRPLE LMREGSRTLL VLEDPGGGPL AHLLGAPLEI EDSLRLAVGI AAALGRLHQR GLVHKDLKPT HIMVNCADGR VRLTGFGLAS RLPRERQAPE PPETIAGTLA YMAPEQTGRM NRSIDSRSDL YALGVTLYQM LTGALPFMAA DPTEWVHCHI ARKPVAPSAR LATVPAAISH IVMKLLAKTA EERYQTAAGV ERDLRLCLAD WRRQRRIDDF PLGEHDSPDR LLIPEKLYGR EHEVEILVAA FDRIVGSGVP ELVLVTGYSG IGKSSVVNEL HKVLVQPRGL FAAGKFDQYK RDIPYATLVQ AFQSLVRPLL GKRDADLASW RDALLAALDV NAGLMTDLIP ELKLIIGEPP PVPDLAPQQA QHRFMQVFRR FIGVFARAEH PLALFLDDLQ WLDAATLDLL EDLLIRPELR YLMLVGAYRD NEVDGTHRLT GKLQAIGSAG VRINQITLAP LARAHVSQLI GEALHCEPAR TEPLARLVHE KTAGNPFFVI QFLHALAERD LLTFDHDAGQ WRWDPDRIHA TGYTDNIVDL MVGKLSRLQG QTQQALQQLA CLGNVAEITT LSTVLGVAQT QLHSALWEAV RQELVERLGG SYRFAHDRIH EAAYSLIPPA SRAQAHLRIG RLLAAETPAE NREEAIFEIV GQLNRGAALI TSRDERERLA GFNLLAAQRA KASAAYGSAL TYLVTGIGLL DDDCWERRHE LILALELNRA ACEFLTGQLS TADERLASLS QRAATTVEQA SVACLHTDVC TTLDRSDRAV AVCLDYLRHV GFEWSPHPDD ETVRREYERI GSLLGKRAIE ALIDLPLMQD PASLATAEVL SKLLPPAVQT DANLASLTIC KAVSFSLERG NCDASCVPYI MLCRIAGPRF GDYQAGFLFG QLGYELVERR GLKRFEASTY HCFAVFVVRW MKHVRVCRNL LRRALEAANR IGDLTYGAYT CQHLNSNLLF AGDPLPEAQG EAERGLAYAE KVRFGLVIDF ISTQLALIRM LRGRTPTFGC LDDGRFSERH IEEHLSNNPT LALAACLYWI RKLQARYLAG DYAVAMDAAS KAQQLLWTSA SFLEEAEFHF YAALARAAWC DAVPGGERTQ HLNAVAAHHR QLRIWAANCP ENFANRVELV GAEMARIEGR VLDAENLYEQ AIRSAQESGF VHNEALAYEL ASRFYSARGF ARIARLYLQE ARYGYLRWRA DGKVRQLEER YPDLRTEELA PGPTTTIATP VERLDLATVI KVSQAASGDI VLDKLIDMIM RTAVEQAGAQ RGLLIRSNSG EQWIAAEATT DGDATRLQVR DMPVSAASLP ESMLYHALRT RENIILDDAA SDSPFAADSY IRRHRTRSVL CLPLMNRAQL TGVLYLENNL TAGVFNPARL AVLKLVASQA AISLENAYLY RDLAEREAKI RRLVDANIIG ILVWNAGGVI LEANDAFLRM VGYEREDLVS GRVRWRDLTP PEWLQGSEQA LGEAVQTGRA PPYEKEYVRK DGSRVAVMVG LATFEAGREE GVAFVLDLTE RKRVEEQARQ NERRYREVQA EFAHANRVAT VGQLAASIAH EVKQPIAATV ANAGAALLWL SARPPDLSEA RQALERIVND GSRAGDVINR IRDLIRKAPP RKERVDINAA IHEVIELTRS EAARSGASVE TQLAEDLPSI EGDRVELQQV LLNLIINALE AMNDVGDGVR HLFITTVKVD SGSVLVTVRD SGPGFAPQSA ERVFVPFYTT KPTGLGMGLS ICRSIIEAHG GRLWASANLP RGAIVQFTVP PYPVVSS
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