| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2417 |
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| Symbol | |
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| ID | 6283362 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 2720843 |
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| End bp | 2722942 |
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| Gene Length | 2100 bp |
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| Protein Length | 699 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642621971 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_001896037 |
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| Protein GI | 187924395 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAACCG CAGAGATTGA TGGCCTCGCA ACGTCGCCGG CTTGGGCCCG AACAATTGGG
CGCATCGAGG TCGGCGCTCA TCTCGTGAGT GAGCGGGAAG GCTATACGCA CCATGGAATA
TATGCTGGGA ATGGACTCGT CATTCACTAC GGAGGCTTTC TTCAATCCGT TAAACGCCGT
CCCGTTGAAT ATATTGCGCT GCGCGACTTT GCAGCGGGAA ACGGAATAAC GATTCAGCCC
GAACCAGATG CTGTTTATAG CGGAATCCAA GCCGTGGAGA GAGCCCGGTC CCGTCTCGGT
GAAGACCGAT ATCGATTGTT GACCAATAAC TGCGAACACT TCTGTACTTG GTGTGTGCTG
GGGTCCGGGC GTAGTCAGCA GGTGCGTCGA TGCCTGAGGA ATCCATGGGC AGGTGTCAAG
ACGCTGTTTG CGCTAGCGGA AGACGGTTGC CGTGATTTCG CGGCGCCGGC TCTTCGGGAC
GTTCACCGGC TAACGCGCGC TTTGTGTCGC CAACTTCGGG GCGAGTGCAC CACGCGCTTT
TCCACGCGGA ACCGCTTAAG CAACTATCTG ATGGGCAAGA GAATGAGCAT TCAGTCAAAC
GCGAGACGGC GTGCATCAGG CGCAATGAAA TCGGCGCTGT CTTTGATCTT CACGGCGGCG
CTGTCGGCTT GCGTGAACTA TGCAGGCATC CATGGCGAAG CGAAAACGGC CGACCCGCAG
CAGTTTGCAA CGCGGCAAAG CCTTCCCGCC GAGCAAGGCC ATTGGCCCGC AGCCAATTGG
GCTGACCAGT TTGGCGATGC GCAACTGAGC TCGCTGATCA GCGAAGCATT GAGCAGCAAC
CCGACGCTCG ACCAGGCGCG TGCCCGCGTG GCGGCCGCCT TCGCCTACAC CGAGACGGCG
AAGGCGAGCA CGATGCCGCG TGTCGACGCC AGCTATTCGC TCACTCGCGA ACAGTTGTCG
AATACGACTT TCCTGCCGCC TCCGTTCGGC GGCTCATGGC AGACGGAGAA CAGGGGCGTG
CTGGGCGCTT CCTTTGATCT CGATCTGTGG GGCAAGAACC GCGAAGCGCT GAAAGCGGCA
ATCTCGCAGT CTCAGGCGAG CCAGGCCGAT GCGGAAGTCG TCAAGCTGAC ATTGACCACA
TCGATTGCCC GCGCCTACAA CCAGCTTGCG CGCCTATACG TGCTGCGCGA CATCGCGCAA
AAGGAAATCA CACAGCGCGA GCGGATCGAC CGCATTACCG CAGGGCGAAT TGCGACAGGT
CTCGACACGG AAGTGGAGCG CAAGACAGTG CATGCCAATC TTGCGACAAG TCGCGCCACT
TTGAAATCGC TCGACGGACG AATCCTCACG ACACGCTATC AGATCGCCGC GCTGCTTGGC
GCGGGTCCTG ATCGTGGTTT GCAGATCTCA CGCCCAACGC TCGGCTTGGG CGACGAAGTG
CGTCTGCCCG ACAATCTGCC CGCCGATCTC GTGAGTCGCC GCCCGGAAAT CGTGGCCGCG
CGTTGGCGCA TCGATGCGAT GGCGCACGAC GTGAAAGAAG CGAAAGCGGA GTTCTATCCC
GACATCAACC TCAGTGCCGC AATCGGGCTC GATGCGTTCG GCTTCGGCCG CTTTCTGACG
GCGGCGAGCC GCACGGCGTC GGTCGGTCCG GCCATTCACC TGCCGATCTT CGACGCAGGC
GAATTGCGCG CGCAGCTAAA GGGCCGCTAC GCCGACTTTG ATTATGCCGT CGCGGCCTAC
AACCAGACGC TCGTGACCGC GCTGAACGAA GTCGCCACGC AACTCGCGGA CGTGCATTCG
ACAGATGCGC AACTTGTCGA TGCGCAGGCC GCGCAGGAAG CGGCCCGCCA AGCCGATGAA
CTCGCGCTTA TTCAGTACAA GGCCGGCCTC ACGAATCAAC TGACCGTCCT TAACGTCGAC
TTGAACGCGT TGTCCGCCGA TCAGGCCGTC GCGAATCTGC GCATGAACCG CCGGGATCAG
CAGATTGCAT TGGCGTCCGC GTTGGGCGGC GGTTTCGTCG ACGAGCCGAA CGCAGCCCCC
GCGGCGGCGC CGCGCGCCAA TGCAACGGCA CCCGGCGCGC CGGTCGTCGC TGTGCGCTGA
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| Protein sequence | METAEIDGLA TSPAWARTIG RIEVGAHLVS EREGYTHHGI YAGNGLVIHY GGFLQSVKRR
PVEYIALRDF AAGNGITIQP EPDAVYSGIQ AVERARSRLG EDRYRLLTNN CEHFCTWCVL
GSGRSQQVRR CLRNPWAGVK TLFALAEDGC RDFAAPALRD VHRLTRALCR QLRGECTTRF
STRNRLSNYL MGKRMSIQSN ARRRASGAMK SALSLIFTAA LSACVNYAGI HGEAKTADPQ
QFATRQSLPA EQGHWPAANW ADQFGDAQLS SLISEALSSN PTLDQARARV AAAFAYTETA
KASTMPRVDA SYSLTREQLS NTTFLPPPFG GSWQTENRGV LGASFDLDLW GKNREALKAA
ISQSQASQAD AEVVKLTLTT SIARAYNQLA RLYVLRDIAQ KEITQRERID RITAGRIATG
LDTEVERKTV HANLATSRAT LKSLDGRILT TRYQIAALLG AGPDRGLQIS RPTLGLGDEV
RLPDNLPADL VSRRPEIVAA RWRIDAMAHD VKEAKAEFYP DINLSAAIGL DAFGFGRFLT
AASRTASVGP AIHLPIFDAG ELRAQLKGRY ADFDYAVAAY NQTLVTALNE VATQLADVHS
TDAQLVDAQA AQEAARQADE LALIQYKAGL TNQLTVLNVD LNALSADQAV ANLRMNRRDQ
QIALASALGG GFVDEPNAAP AAAPRANATA PGAPVVAVR
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