| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2396 |
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| Symbol | |
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| ID | 6282670 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | - |
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| Start bp | 2695817 |
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| End bp | 2697784 |
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| Gene Length | 1968 bp |
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| Protein Length | 655 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642621951 |
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| Product | YadA domain protein |
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| Protein accession | YP_001896017 |
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| Protein GI | 187924375 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.340419 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAGA GCCGAAATAA GTTGGTGTGG AATCGTCAAG TTGGCGCGCT GGTCGCCGCA
GCCGGGACGC AGCGCGGCGT GCGGGGTGAC GACGGGCAAG CGGAAATGAG TAAGATCGGT
ATCCCACTGA AATCAAAGGC GGCGCTGGCA GCACTGACGG CAGTGATACT GCTGCCGGTG
GGTCAGGCGT ACGCAGATAA CCTCGCTGTC GGTGGCGAAA ACGCTGGTCA GACTGCGACC
GTCGGGGGCG CCACGGCGCC CCCCGCGAGC ACGGGCGGAG TGTTCCCTGC GGTCGCTGGT
GCGGACGGTT CAAGCCAGAA TACGGCTGTC GGCATAAATG TTTCGGCGCA AGGCGGTGCC
GCGACGGCAG TGGGTGATAC GGTCACGGCG AATGGTACGA ATGCCACGGC GGTCGGCGCC
AATTCGGTCG CAAACGGCAC GAGAGCCGTT GCGATCGGCG GTGGGGCGAC CACGACGACC
GGCGACGCGA CTGCAATCGG TGCGCTTGCA CACACTACTT CTGAATTTTC AACGGCTGTC
GGTACCAATA GTTCGGCCGC TGGCGGAACG GCGCTGGGTT TCCAGGCAAG TGCGAACGCG
TCTGACGCCA CGGCAGTCGG TGTGGATTCC GTGGCGTCAG GGATCGGTAG CGTTGCAATT
GCCCGCGCAC AGGCGACCGG CCAGAACGCA ATTGCGATCG GTGAGTCTTC AGCGGCAAGC
AACGTAGCTG CCGTGGCCGT AGGTGCCGGG GCGAACGCGA GCAGCAACAG CGCCACGGCA
ATAGGTCCCT TAGCGACGGC AAGCGGCGGT AGCTCGACGG CGCTCGGCAA CTCCAGCGTG
GCCAGTGGCG GATCGGCCAT TGCAATTGGC CAGTCGTCAA CTTCATCATC ACTCACTTCC
ATCGCAGTCG GATTTAATGC GAATGCCGCA TCGGCCAATG CGATCGCGCT GGGCACGCTC
ACACAGGCCA CAGGCGCAAA TTCAATCGCG ATCGGTAACG CAGCCGTCGC TTCGACTGCA
GAATCGACAG CGCTCGGGTC CGGCGCGGTT ACACGTGCAG CAACGAACGT GAGTAGCGTC
ACGCTGAACG GCGTCACCTT CGGTGGCTTC GCGGGGGCGG CGCCGACCGG CGTCGTGAGT
ATCGGCGCGG TCGGTCAGGA ACATCAGTTG CAGAATGTCG CCGCCGGTCG AATCAGCGCC
ACCAGCACGG ACGCTGTGAA CGGCTCGCAG CTTTTCTCGA TCGCTTCGCA GGTTTCGGCA
CTCTCGACCA ATCTGGCGTC AATCACCGTT ACGGTCGACA AGATCTCGAC GTCCGGCTCG
AATGGCACGG CCACTGACGA CACCGGCACC GCAGTGGGCA AAAATTCGGT GGTGTCAGTT
CCGAACGGAA CCGCTGTGGG CAACGGTGCG AACGTTTCGG GGCAAGACGG TACGGCAATC
GGCACGAACA CGACAGTCAC CGCTGCACGC GCAACCGCCA TCGGCGCGAA TTCCAGAGTC
ACAGGGACGG ACTCGACTGC GATCGGCACC AATAGCCAGG CCACCGCGAA TAATTCGGTT
GCCCTGGGTG CAAATTCAGT CGCGGACAGG GACAACACGG TTTCGGTCGG CGCGCCAGGT
GCTGAGCGTC AGATCACCAA TGTTGCAGAC GGTACGGCTC CGACTGACGC AGTCAACGTG
CGACAGATGA ATGACGCAAT CAACAGCGTT CGCGATGACG TGCAGAAATA TCGTCGTGAC
GCGAACGCTG GTACAGCGTC CGCAATCGCC ATGGCGAATT TGCCGCAAGC TGTGTTGCCG
GGTGAGAAGG TTGTTGCACT CGCAGGCGGC AACTACGGTG GACAATCCGC AATGGCTGTC
GGGCTTTCGG TCGCGACGCA GAAGTGGATG GTGAAAGGCT CCGTCACGAC GGGCGTTTCG
GGTCACGGTT CCGTGGGTGC TGGCGCGGGC GTCGGCTACC GCTGGTAA
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| Protein sequence | MNKSRNKLVW NRQVGALVAA AGTQRGVRGD DGQAEMSKIG IPLKSKAALA ALTAVILLPV
GQAYADNLAV GGENAGQTAT VGGATAPPAS TGGVFPAVAG ADGSSQNTAV GINVSAQGGA
ATAVGDTVTA NGTNATAVGA NSVANGTRAV AIGGGATTTT GDATAIGALA HTTSEFSTAV
GTNSSAAGGT ALGFQASANA SDATAVGVDS VASGIGSVAI ARAQATGQNA IAIGESSAAS
NVAAVAVGAG ANASSNSATA IGPLATASGG SSTALGNSSV ASGGSAIAIG QSSTSSSLTS
IAVGFNANAA SANAIALGTL TQATGANSIA IGNAAVASTA ESTALGSGAV TRAATNVSSV
TLNGVTFGGF AGAAPTGVVS IGAVGQEHQL QNVAAGRISA TSTDAVNGSQ LFSIASQVSA
LSTNLASITV TVDKISTSGS NGTATDDTGT AVGKNSVVSV PNGTAVGNGA NVSGQDGTAI
GTNTTVTAAR ATAIGANSRV TGTDSTAIGT NSQATANNSV ALGANSVADR DNTVSVGAPG
AERQITNVAD GTAPTDAVNV RQMNDAINSV RDDVQKYRRD ANAGTASAIA MANLPQAVLP
GEKVVALAGG NYGGQSAMAV GLSVATQKWM VKGSVTTGVS GHGSVGAGAG VGYRW
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