Gene Bphyt_2345 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_2345 
Symbol 
ID6280869 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010681 
Strand
Start bp2641686 
End bp2642567 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content64% 
IMG OID642621902 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_001895968 
Protein GI187924326 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02957] RNA polymerase sigma-70 factor, TIGR02957 family 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGACG ACGTACTTGC CTTTAACGGG CTGCGCCCGC GATTGCAGAA AATCGCGTAT 
CGAATGCTGG GGTCCGTTGC CGAGGCCGAA GATATCGTGC AGGACGTCTG GCTGCGTTGG
CATGCAACAG CCCGCGAAGC CATCGACAAC GCGGAGGCGT GGCTGGTCGC GGTCACGACG
CGAATGTCCA TCGACCGTCT GCGCGCGGCC AAGATTCAAC GCGAACACTA CGCGGGCATC
TGGTTGCCCG AACCCGAGAT GACCGAATTC CCGGCTACGC CGGAGGAGGC CACGGAGCGC
GCCGACGACG TCTCCGTGGC TTTTCTGGTG CTGCTCGAGC GGCTTACGCC TGATGCCCGG
GCGGCGTTCC TGCTGCGCGA GGTATTCGAC GCCGACTATG ACGAAGTCGC ACGAGCCATC
GGCAAGACGG AGGCGGCGTG CCGTCAGCTG GTCAGCCGCG CAAAAGCGCA GTTGCGCGAC
GATCGTCCGC GCTCCGAGGT GCCGCGCGAA ACGCATCTGC GCCTGCTGCG AACATTCGTG
CAGGCGCTGC AGCGCGGCGA CTTTCACGCG ATCAACGCAT TGCTGGCCGA AGACGCAAAG
CTGATCGGCG ACGGCGGCGG CAAAGTCCAG AGCTTCCCGG AGCCGATGGC GGGCGGCCAG
CGCATCGCAC AACTGTTCTA CGCGTCGCAC CGGCGTTATG GCGACGAACT GAGCGTCAAG
CTCGTAATGC TCAACGGCCA ATGGGCGCTG CTGCGGTTTA TCGAGGGCGA ACTCGAATCG
GCACAGTCGT TCGAAACGGA CGGCGAGCGT ATCGTCCGTA TTCATGTGCA GCGCAACCCT
GACAAGCTCG CGCGCATCGC GGCGGCACAC GCCAACGGCT GA
 
Protein sequence
MDDDVLAFNG LRPRLQKIAY RMLGSVAEAE DIVQDVWLRW HATAREAIDN AEAWLVAVTT 
RMSIDRLRAA KIQREHYAGI WLPEPEMTEF PATPEEATER ADDVSVAFLV LLERLTPDAR
AAFLLREVFD ADYDEVARAI GKTEAACRQL VSRAKAQLRD DRPRSEVPRE THLRLLRTFV
QALQRGDFHA INALLAEDAK LIGDGGGKVQ SFPEPMAGGQ RIAQLFYASH RRYGDELSVK
LVMLNGQWAL LRFIEGELES AQSFETDGER IVRIHVQRNP DKLARIAAAH ANG