| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2328 |
|---|
| Symbol | |
|---|
| ID | 6283439 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 2625897 |
|---|
| End bp | 2626418 |
|---|
| Gene Length | 522 bp |
|---|
| Protein Length | 173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642621885 |
|---|
| Product | OHCU decarboxylase |
|---|
| Protein accession | YP_001895951 |
|---|
| Protein GI | 187924309 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3195] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03164] OHCU decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.256627 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGCGA TGCAATACAC TCTGGACCAA CTCAACAGCA CCTCGATCGA CGCGTTCGTC
GCAGCGCTGT CGGGCATTTT CGAGCACTCG TCGTGGGTCG CGGAAATCGC CGCGCAGCAA
CGGCCTTTCG CCAGCATCGA CGATATGCAT CGCAAGATGT CGAATATCGT CGAGACTTCA
GGCGAAGAGA AGCAACTGGC GTTGATCAAC GCTCACCCGG AGCTCGCCGG CAAGGCCGCG
GTGCGCGGCG AACTGACCGC CGAATCCACG CGTGAGCAGA GCGGCGCCGG CCTCGCGCAA
TGCACGCAGG AAGAGTTCGA CAGACTGCTC GCGCTGAACG CCGCGTATCG CGAGAAATTC
GGCTTCCCGT TCATTCTCGC CGTGCGCGGG TATGACCGTC ACGGCATCAT CGCGAACTTC
GAGGCGCGCG TGAACAATAG CCGCGCCGAC GAACTGCGCG CGAGCCTGGA TCAAATCTAC
CGCATCGCAC GTTTCCGGCT CGACGACCTG ATCGACGCGT AA
|
|---|
| Protein sequence | MKAMQYTLDQ LNSTSIDAFV AALSGIFEHS SWVAEIAAQQ RPFASIDDMH RKMSNIVETS
GEEKQLALIN AHPELAGKAA VRGELTAEST REQSGAGLAQ CTQEEFDRLL ALNAAYREKF
GFPFILAVRG YDRHGIIANF EARVNNSRAD ELRASLDQIY RIARFRLDDL IDA
|
|---|
| |