| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2260 |
|---|
| Symbol | |
|---|
| ID | 6284717 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 2548526 |
|---|
| End bp | 2549566 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642621817 |
|---|
| Product | transcriptional regulator, LacI family |
|---|
| Protein accession | YP_001895883 |
|---|
| Protein GI | 187924241 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.167374 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.588495 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACGA TCAAGGATGT AGCGGCTGCG GCAGGCGTGT CGTTCACGAC GGTATCGCAC
GTGGTGAACA ACTCGCGGCC GGTGTCGGCG GACGTGCGCG CGAAGGTCGA GCACGCGATC
CGTCAGCTCC ACTATGTTCC GTCGGCGGTG GCCCGCTCGC TGAAGGCGCG GGCCACGGCG
ACCATCGGGC TGGTCGTGCC GAACGCCACG AACCCGTACT TCGCGGAACT GGCGCGCGGC
ATCGAGGACG GTTGTTCGCG CAACGGCTAC TGCGTCTTCT TCTGCAATTC CGACGACGAT
CCGGCCAAGC AGCGTAACTA CCTGCGCGTG CTGCAGGAAA AGCGCATCGA CGGTCTGATC
GTCGCGTCCG CCGGCGACGA CGCCGTGCTC GCGCAGACGC TCGCCGACTC GCACGAGCCG
CTGGTCATTC TCGATCGCAA CATCGAAGGG CTGAACGCGG ATCTGGTGCA GATCGACCAC
GAGAAGGGCG GCTATCTGGC GACCCGGCAT CTGCTCGAAC TGGGGCATGT AAGGATCGGC
TGCATCACCG GGCCGATTCA GACGGCGGTC AGCGCGATGC GCGTGCACGG CTTTATCCGC
GCGATGACGG AGCGCGGCAT CGAGATTCCG CCCGACGCGA TCGTGGAAAG CGATTTTTCG
GGCACCGGCG GCCACCGCGC GGCCGCGCAA CTGTTCGACA CGATCAGGCC AACGGCGATT
TTTGCTGGCA ACGACATGAT GGGCATCGGC GCGCTGCGGG CCGCCGCGGA ACGTAATATC
AGCGTGCCGC GCGACTGCTC GATCATCGGT TTCGACGATA TCGAACTGGG GCGTTTCACC
TATCCGGCGC TCTCGACGGT CGGGCAATCC GTGCGCGCGC TCGGCGATAT GGCCGCGCAG
ACGCTGATCG AGCGGATTGC CGGGACCTCG TCGGGCACGC CACGCGCGCC GGGCCGCCGG
CGCGTGGTGT CGCCGCGGCT GATCGTGCGC GAATCCACCG CCACCTGGGC CGGCGCGGCC
AAGCGCGATC TGGCCGCCTG A
|
|---|
| Protein sequence | MATIKDVAAA AGVSFTTVSH VVNNSRPVSA DVRAKVEHAI RQLHYVPSAV ARSLKARATA
TIGLVVPNAT NPYFAELARG IEDGCSRNGY CVFFCNSDDD PAKQRNYLRV LQEKRIDGLI
VASAGDDAVL AQTLADSHEP LVILDRNIEG LNADLVQIDH EKGGYLATRH LLELGHVRIG
CITGPIQTAV SAMRVHGFIR AMTERGIEIP PDAIVESDFS GTGGHRAAAQ LFDTIRPTAI
FAGNDMMGIG ALRAAAERNI SVPRDCSIIG FDDIELGRFT YPALSTVGQS VRALGDMAAQ
TLIERIAGTS SGTPRAPGRR RVVSPRLIVR ESTATWAGAA KRDLAA
|
|---|
| |