| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2191 |
|---|
| Symbol | |
|---|
| ID | 6282644 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 2471288 |
|---|
| End bp | 2472766 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642621749 |
|---|
| Product | outer membrane efflux protein |
|---|
| Protein accession | YP_001895815 |
|---|
| Protein GI | 187924173 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCCCGTTA TCAAAGCCGC GCGAGCGGTT ATATCAGCGG TCGCGTCCAT GTTTGCTTCG
GCCGCGAGGC CAGCGATCAA ACCCGCGCCG CGACCTTACG CACAGCTGCG CGCTCTCGTG
CCGCTTTGCG CGCTTCTGAT AAACGGCTGC ACGTGGTATC ACCGCGAGCC GCTCGCGCCA
GAGGACACGT CCACCTCCGC CCGTTCGCTC GAACGTATCC GCATCGATTC GTCTAGCATG
CCGCTGCCGG AACTGGCCGC GCATCGCTTC GACCCATCCG ACGGGCTCGA TATCGACGAG
GTCGCGATGC TCGCGGTCGC CAACAATCCC GACCTCAAGC TGGCTCGCGA CGACCTTGGC
ATCGCCCGCG CTCAGGCGTA TTCGGCCGGT CTGCTGCCGG ACCCGCAACT GAGCATAGCG
AGCGATTACC CCGGCCAGAT CGGCACCACG CGCGCGTTCA GCTACGGCTT GAGCATGGAC
GTGACGGCGA TCGTGTTGCG CAGCGCCAAT AAACAATCCG CCGACGCCAC CGTAGCCAAG
ACCGATCTCG GCCTGCTGTG GCAGGAATGG CAGATCGTCG CGCAAGCGCG GCAGCTGTTC
ATCAAGACGA GCTTCCAGCA GGACACGCTG CCGCTTCTGC AGCGCCAGCG CGACCTCGCG
CGCACGCGCT ACGATCGCAT GGCCGAAGCG CGCCGCGACG GCAATCTCAC CGACGATACG
CTCACCGCCG CGCTCACCGC CTACAGCGAC GCCCGCAAGC AATACACCGA TGCCGAACGC
GCAGCCGAGC AAACGCACCA CGATCTGAAC GCGCTGCTCG GCGTCTCACC CGAGGTGCAA
TTGCAACTCG CCGGAGGCGA AAACATCGCA CCGCTCTCCG ACACGACCCT CGATGCCGCG
CTCGCCGGAC TGCCTCGACG CCGCCCCGAT CTGATCGCGC TGCAAGCAGG CTACGAGGCG
CAGGAGCAAA AATATCGCGC CGCGATTCTG AGCCAGTTCC CGAGTCTGTC GGTGGGCTTC
GTGCGCGCTC GCGACACGTC GAACATTTAT ACGAGCGGCT TCCAGATCAA CCTCAGCCTG
CCGATCTTCA ACCGCAACCA GGGCAACGTT GCGATCGAGC AGGCGAGCCG CCAGCGTTTG
CGCGACGAAT ATCAAACGCG CCTGAACAGT GCCTACGCCG ACGTCGCGCA TCTGCGCGCG
GACAACGCAA CCCTCACGCG GCAATTGCAG CAGACCGAAG CCGCGTTACC CGAGGCAGAC
GTTGCCGCCC AGCACGCGGC CGCGGCCTAC GCGGAACACA CCCTGGCGCT CGGCGCTTAC
ACCGACGCGC AAAGCGCCGC GCTCACCAAA CAGATCGACG CCGCGACCTT GCGCGAGTCG
CTCGCCGAAC AACGCGTCGG GTTGCAGGCA CTGCTCGGCA GCGCGATTCC CGACGCCTAC
TCCACCGCTC TCACCTTCAC CGACACTCAT GCGAAATAG
|
|---|
| Protein sequence | MPVIKAARAV ISAVASMFAS AARPAIKPAP RPYAQLRALV PLCALLINGC TWYHREPLAP
EDTSTSARSL ERIRIDSSSM PLPELAAHRF DPSDGLDIDE VAMLAVANNP DLKLARDDLG
IARAQAYSAG LLPDPQLSIA SDYPGQIGTT RAFSYGLSMD VTAIVLRSAN KQSADATVAK
TDLGLLWQEW QIVAQARQLF IKTSFQQDTL PLLQRQRDLA RTRYDRMAEA RRDGNLTDDT
LTAALTAYSD ARKQYTDAER AAEQTHHDLN ALLGVSPEVQ LQLAGGENIA PLSDTTLDAA
LAGLPRRRPD LIALQAGYEA QEQKYRAAIL SQFPSLSVGF VRARDTSNIY TSGFQINLSL
PIFNRNQGNV AIEQASRQRL RDEYQTRLNS AYADVAHLRA DNATLTRQLQ QTEAALPEAD
VAAQHAAAAY AEHTLALGAY TDAQSAALTK QIDAATLRES LAEQRVGLQA LLGSAIPDAY
STALTFTDTH AK
|
|---|
| |