| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2144 |
|---|
| Symbol | |
|---|
| ID | 6282743 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | - |
|---|
| Start bp | 2422655 |
|---|
| End bp | 2423401 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642621703 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001895769 |
|---|
| Protein GI | 187924127 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGC TCACAGGTAA AGTTGCAGTC GTAACCGGTG CATCGAAAGG TATCGGCGCG
GCAATCGCCA AGGCATTGGC TGCGCAAGGC GCTTCAGTGG TGGTGAACTA CGCGTCGAGC
AAGGCCGGCG CGGAAAGCGT GGTCGAGGCG ATCACCGCTG CCGGCGGCAA GGCCGTGGCC
GTCGCGGGCG ACGTGTCCAA AGCCGCGGAC GCGCAAGGCA TCATCGATAC GGCGGTGGAA
ACGTATGGCC GTCTCGACAT TCTCGTCAAC AACTCGGGCG TGTATGAGTT CGCGCCGATC
GAAGAGATCA CCGAAGAGCA TTTCCATAAG CACTTCAACG TGAACGTGCT GGGTCTGCTG
TTGACCACGC AGGCAGCGGT CAAGCATCTC GGCGAAGGCG CGAGCATCGT CAATATCAGT
TCGGTGGTGA GCCGCATCAC GCCGCCGGGC AGCGCAGTCT ATACCGCCAC GAAGGGCGCT
GTCGACGGCA TCACCGGCGT GCTGGCACGT GAGCTTGGCC CGCGCAAGAT CCGCGTCAAT
TCGGTGAACC CCGGCATGGT CGCAACCGAA GGCACGCACG CCGGCGGCAT CCTCGGCTCC
GACTTCGAAA CGTGGGCCGT CAGCACAACG CCGCTCGGCC GTATCGGCCA GCCTGACGAT
ATCGCCGATG TGGTCGCGTT CCTCGCTTCC GACGACGCAC GCTGGCTGAC TGGTGAAAGC
CTGATCGCTA GCGGCGGCTC GCGTTAA
|
|---|
| Protein sequence | MSKLTGKVAV VTGASKGIGA AIAKALAAQG ASVVVNYASS KAGAESVVEA ITAAGGKAVA
VAGDVSKAAD AQGIIDTAVE TYGRLDILVN NSGVYEFAPI EEITEEHFHK HFNVNVLGLL
LTTQAAVKHL GEGASIVNIS SVVSRITPPG SAVYTATKGA VDGITGVLAR ELGPRKIRVN
SVNPGMVATE GTHAGGILGS DFETWAVSTT PLGRIGQPDD IADVVAFLAS DDARWLTGES
LIASGGSR
|
|---|
| |