| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_2020 |
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| Symbol | |
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| ID | 6284640 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010681 |
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| Strand | + |
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| Start bp | 2282274 |
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| End bp | 2283788 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642621585 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_001895651 |
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| Protein GI | 187924009 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.0319738 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCAC AGTTAATTCC ACGGATAGCC GGCTCGCGAA TCGCGAAGAC CGGCGTGACG
GTGATCTTCG CGGCCGTTTT GTCCGCCTGC GCGAATTACG CCGGTATCTC GAGCGACAAG
CAGATGGCGC AGCCGCAGAC CTACGCGACT CAACAAAGCA TTCCGCAGGA CAACGGTCAC
TGGCCGGCCG CCGATTGGGC GGACCAGTTC GGCGACGCGC AACTGAAGGC CTTGCTCGCT
GAAGCGTTGA AGGGCAACCC GTCGGTCGAA CAGGCTCGCG CTCGCGTCGC CGCGGCCGCC
GCGTACAGCG ACACGGCGAA GGCGAGCACC CTGCCGAAAG TCGGCGCGGA CTATTCGTTG
ACGCGCCAGC AGTATTCGGG CACGGCGCTC GTGCCGCCGC CGTACGGCGG TTCGTGGCAA
ACGGAGAACA AGGGCTTGCT GTCCGCGTCA TACGACCTCG ATCTGTGGGG CAAGAATCGT
GAAGCGCTGA AAGCCTCGCT GTCGCAGTTG CAGGCGACCC AGGCGGACGA GGAAGTCGTC
AAACTGTCCC TCACGTCGGC CACGGCCCGC GACTACAACC AGCTTGCACG GCTCTATACG
CTGCGTGACA TCGCGCAGGA AGAAATCACG CAGCGCGAAC AGATCGACCG CATTACAGCC
GGGCGCATTG CAACGGGCCT CGACACGCAA GTGGAACGCA AGACCGCGCA GGCGAACCTC
GCCACCAGCC GCGCGACGCT GGCTGCGATC GACGGCAGCA TCGTCACGAC GCGTTATCAG
TTGGCCGCTT TGCTCGGCGC CGGACCGGAT CGCGGTCTCG CCATCGCGCG CCCGACACTC
GGCGTGGGCG ACGAAGTGCG CCTGCCCGAC AACCTGCCGG CCGATCTCGT GAGCCGCCGC
CCGGACCTGG TCGCGGCGAA ATGGCGCGTC GATGCACTCA CGCACGACGT CAAGGAAGCC
AAGGCCGAGT TCTATCCTGA CATCAACCTG AGCGCCGCGA TCGGTCTCGA CGCGTTCGGT
TTCGGCCGTT TTCTGACGGC GGCGAGCCGC ACGGCGTCGG TCGGCCCGGC GATTCATTTG
CCGATTTTCG ATGGTGGTCA ATTGCGCGCG CAATTGAAAG GGCGTTACGC CGATTTCGAC
TACGCGGTCG CCACATATAA CCAGACGCTG GTCACCGCCT TGTCCGAAGT CGCGACGCAA
CTCGCGCAAA TCCGTTCGAC GGACGAGCAG CTGGCCGACG CGCAAGCCGC TCAGGAAGCC
GCCCGCGGCG CCGATCAGTT GGCGCTCGTG CAATACAAGG CCGGCCTCAC GAATCAGCTG
ACGGTGCTGA ACGCCGACAC CACGGCGCTC GCCGCCGACC AGCAGGTCGC GAATCTGAAG
ATGAACCGGC GCGATCAGCA GATCGCGCTG GCCGCAGCGC TCGGCGGCGG TTATGTCGAT
AGCGCCGCCT CCGTCGCCAG CAGCGGCGCC GCTGTTCCAG CCGCTTCCGC CCATCCCGTC
GCCGCCGCGC GTTAA
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| Protein sequence | MKPQLIPRIA GSRIAKTGVT VIFAAVLSAC ANYAGISSDK QMAQPQTYAT QQSIPQDNGH
WPAADWADQF GDAQLKALLA EALKGNPSVE QARARVAAAA AYSDTAKAST LPKVGADYSL
TRQQYSGTAL VPPPYGGSWQ TENKGLLSAS YDLDLWGKNR EALKASLSQL QATQADEEVV
KLSLTSATAR DYNQLARLYT LRDIAQEEIT QREQIDRITA GRIATGLDTQ VERKTAQANL
ATSRATLAAI DGSIVTTRYQ LAALLGAGPD RGLAIARPTL GVGDEVRLPD NLPADLVSRR
PDLVAAKWRV DALTHDVKEA KAEFYPDINL SAAIGLDAFG FGRFLTAASR TASVGPAIHL
PIFDGGQLRA QLKGRYADFD YAVATYNQTL VTALSEVATQ LAQIRSTDEQ LADAQAAQEA
ARGADQLALV QYKAGLTNQL TVLNADTTAL AADQQVANLK MNRRDQQIAL AAALGGGYVD
SAASVASSGA AVPAASAHPV AAAR
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