| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_1992 |
|---|
| Symbol | |
|---|
| ID | 6284059 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010681 |
|---|
| Strand | + |
|---|
| Start bp | 2249406 |
|---|
| End bp | 2250623 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642621557 |
|---|
| Product | Mandelate racemase/muconate lactonizing protein |
|---|
| Protein accession | YP_001895623 |
|---|
| Protein GI | 187923981 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.589725 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTCG TCTCGCTCGA AACGCATATC GTCGCCGTAC CGCCGCCGCA CGTGGGCGGC
ATGTACTGGA TCTTCGTCAA GCTCAAGACC GATTGCGGGA TTGAAGGCGT CGGCGAAATC
TATTCGGCGA CCTTCCATCC GAAAGCGATG ACCCACATCA TCGACGACGT ATTCGGCCGC
TATCTGCTCG ACAAAGACCC GCATCACATC GAGCGGCTCT GGCGCGAAGC GTATTCGAGC
GGTTTCACGC AACGCCCCGA TCTGACGATG ATGGGCGTGG TCAGCGGTTT GGAAATGGCG
TGCTGGGACA TTATCGGCAA GGCGGCTAAC AAGCCGGTGT ATGAGTTGCT GGGCGGCATG
GTGAATCGGC GCCTGCGTTC GTACACGTAT CTGTATCCGA AGAACAGCCG CGGCGAGTAC
GACTACGACG ATCCCGATCT GGCGGCCGAA TGCGCGCTTG AAAACGTCAA GCGCGGCTTC
ACGGCCGTGA AGTTCGATCC GGCCGGACCG TACACGGCGT ACTCGGGCCA TCAACTGTCG
ATGGAAGTGC TGGACCGTTG CGAAACCTTC TGCCGCCGTG TACGTGAAGC AGTGGGCAGC
AAGGCGGATC TGCTGTTCGG CACACATGGG CAGATGGTGC CTTCGTCGGC GATCCGGCTC
GCGAAACGGC TCGAAAAATA CGATCCGCTG TGGTTCGAAG AGCCGGTTCC TCCGGGCCAG
GAAGGCGCGA TGGCGAAGGT CGCGCAGCAC ACCAGCATTC CGATCGCGGC TGGCGAGCGC
CTGACCACCA AGTACGAATT CTTCAAGCTG CTCGAAGCCG GCGCCGCGTC GATTCTGCAA
CTGAACGTGG CGCGCGTGGG CGGCCTGCTC GAAGCGAAGA AAGTCGCGGC GCTGGCCGAG
GTGTACTACG CGCAGATCGC GCCGCATCTG TACAACGGGC CGATCGGCGC GGCGGCCAGC
ATCCAGCTCG CGACGTGCAC GCCGAACTTC CTGATTCAGG AAAGCATCGG CACGTGGGAC
GGTTTTCATG CGGCCGTGCT GAAGAAGCCG ATTCAATGGG AAGACGGCTA CATCATTCCG
TCGCAAGAAC CGGGCCTTGG CGTCGAGCTG AACATGGAAG TCGTCAGGCA GCATACGCCG
TACACCGGCG AGCGTTTGCA TCTGCAAATG GCGGCGCAAC CGGCCGATGT GAAAGATCTC
GCGCCGGCCA AGGGTTGA
|
|---|
| Protein sequence | MKVVSLETHI VAVPPPHVGG MYWIFVKLKT DCGIEGVGEI YSATFHPKAM THIIDDVFGR
YLLDKDPHHI ERLWREAYSS GFTQRPDLTM MGVVSGLEMA CWDIIGKAAN KPVYELLGGM
VNRRLRSYTY LYPKNSRGEY DYDDPDLAAE CALENVKRGF TAVKFDPAGP YTAYSGHQLS
MEVLDRCETF CRRVREAVGS KADLLFGTHG QMVPSSAIRL AKRLEKYDPL WFEEPVPPGQ
EGAMAKVAQH TSIPIAAGER LTTKYEFFKL LEAGAASILQ LNVARVGGLL EAKKVAALAE
VYYAQIAPHL YNGPIGAAAS IQLATCTPNF LIQESIGTWD GFHAAVLKKP IQWEDGYIIP
SQEPGLGVEL NMEVVRQHTP YTGERLHLQM AAQPADVKDL APAKG
|
|---|
| |